Query= MSMg01no349_l01.b1 MSMg01no349_l01.b1 CHROMAT_FILE:
MSMg01no349_l01.b1 PHD_FILE: MSMg01no349_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:22 2005
(553 letters)
>mm_chr10_25866225_25867176
Length = 952
Score = 986 bits (510), Expect = 0.0
Identities = 540/550 (98%), Gaps = 5/550 (0%)
Strand = Plus / Plus
Query: 4 ggaattctggctctctc-ca-caggataaacgcacatgtttgttgttgtgcctctgggcc 61
|||||||||||| || | || |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctggctatc-cacaacaggataaacgcacatgtttgttgttgtgcctctgggcc 262
Query: 62 attccaaaaggaaaacaaatatgtaaaagacccaaaccttcaagaacaaagagagagaga 121
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 263 attccaaaaggaaaacaaatatgtaaaagacccaaaccttcaagaacaaa-a-agagaga 320
Query: 122 gagagaagatagcagtgggtaggagatggcaacaggactctgcacttgggacagcaggtg 181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 321 gagagaagatagcagtgggtaggagatggcaacaagactctgcacttgggacagcagatg 380
Query: 182 caattgatttagcagagctgagaagagaggcctaggagctagcctgagaggaagctcttc 241
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccattgatttagcagagctgagaagagaggcctaggagctagcctgagaggaagctcttc 440
Query: 242 agcttttcagatgctcagaaaggataatgcgtaccattcaaagtacccatggcagggctg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcttttcagatgctcagaaaggataatgcgtaccattcaaagtacccatggcagggctg 500
Query: 302 cagactggaggagagtgcatgtgatggtctgttggaggtgcaaatctcctcctcaggaaa 361
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 cagactggaggagagtgcatgtgagggtctgttggaggtgcaaatctcctcctcaggaaa 560
Query: 362 ttcagaagagagatatacagctgaaaatggagagccagatggcattggtgaaaggcaata 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagaagagagatatacagctgaaaatggagagccagatggcattggtgaaaggcaata 620
Query: 422 cagaaaaagaggcaatgaaatagagcataccacgtgaaagataaaacttttcaacccccc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagaaaaagaggcaatgaaatagagcataccacgtgaaagataaaacttttcaacccccc 680
Query: 482 acccctcctcttctgctagattgctcccagggcataatccatccaggaaaatgagtccac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acccctcctcttctgctagattgctcccagggcataatccatccaggaaaatgagtccac 740
Query: 542 tatgggacct 551
||||||||||
Sbjct: 741 tatgggacct 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_l01.g1 MSMg01no349_l01.g1 CHROMAT_FILE:
MSMg01no349_l01.g1 PHD_FILE: MSMg01no349_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:23 2005
(512 letters)
>mm_chr10_26052925_26053836
Length = 912
Score = 540 bits (279), Expect = e-157
Identities = 392/467 (83%), Gaps = 63/467 (13%)
Strand = Plus / Minus
Query: 1 ataggtacataatttgtgaacgttggaaattaactttattaatttatttgtcccagaagc 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 412 ataggtacataatttgtgaacgttggaaatcaactttattaatttatttgtcccagaagc 353
Query: 61 atttactaggttaggtttgggtacaggcttggaagcttgggaaaggtggattagcaaatt 120
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 352 atttactaggctaggtttgggtacaggcttggaagcttgggaaaggtcgattagcaaatt 293
Query: 121 ggaaaggacaagtcttacttcctagggttagtcctttactgcaggagttgaatggcagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggaaaggacaagtcttacttcctagggttagtcctttactgcaggagttgaatggcagta 233
Query: 181 ccttgtgggaaccaggttcatgggagcacatagcacacacacacacagacagacacacac 240
|||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct: 232 ccttgtgggatccaggtttatgggagcacata--acacacacacaca------cacacac 181
Query: 241 agacacacacacacacacacacagacacacagacacacacacacagacacacagacagac 300
| |||||||||||||||||||| |||||
Sbjct: 180 a--cacacacacacacacacaca--cacac------------------------------ 155
Query: 301 acacacacacaggaaataagagaaaataaaagatatttaaatcctcaggctggagaggag 360
|||||||||||||| ||||||||||||| ||||||| | |||||||||
Sbjct: 154 ------------gaaataagagaaaacaaaagatatttaagtcctcagaccggagaggag 107
Query: 361 gcaccaggtgggact--------tggtgagaggggacatgataaaagtgtctgagggtaa 412
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct: 106 gcaccaggtgggactcagggtcttggtgagagggaacatgataaaagtgcctgagggtaa 47
Query: 413 ccagggtaagagatagtgcacgtaggtagttcaagccctggaggggt 459
||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 46 ccagggtaagagatagtgcacgt-ggtggttcaagccctggaggggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
