Query= MSMg01no350_e19.b1 MSMg01no350_e19.b1 CHROMAT_FILE:
MSMg01no350_e19.b1 PHD_FILE: MSMg01no350_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:11 2005
(599 letters)
>mm_chr10_103964243_103965241
Length = 999
Score = 957 bits (495), Expect = 0.0
Identities = 501/503 (99%)
Strand = Plus / Minus
Query: 5 gaattcattttacttaccaatagagtaattttaaaaaatgaaacactgttttcatttcca 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaattcattttacttacaaatagagtaattttaaaaaatgaaacactgttttcatttcca 444
Query: 65 tcttttctagaaaagcttttcattccaaagaatagtttaacataatattttaatgttctt 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tctattctagaaaagcttttcattccaaagaatagtttaacataatattttaatgttctt 384
Query: 125 tacactattttacacttactttagtctttgttagtatttgctctctgtagattcaataaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tacactattttacacttactttagtctttgttagtatttgctctctgtagattcaataaa 324
Query: 185 attataccattcacagtggtaggaatttaggaactctaatttggcatattatttttggtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attataccattcacagtggtaggaatttaggaactctaatttggcatattatttttggtt 264
Query: 245 gtacatttttcatacttactttagttttaggtgtaaataataccttcagatcccctggaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gtacatttttcatacttactttagttttaggtgtaaataataccttcagatcccctggaa 204
Query: 305 caaaatccaacacccatttatgataaatatttggagggactggggatacaacgtacatac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 caaaatccaacacccatttatgataaatatttggagggactggggatacaacgtacatac 144
Query: 365 ctcagagtgtatatttatatatactatagcctatagctaatgttattttaaatggagaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 ctcagagtgtatatttatatatactatagcctatagctaatgttattttaaatggagaga 84
Query: 425 aactcaaaacaattacactacaagcaggaacaagacaagagtgacaattcttgccatatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 aactcaaaacaattacactacaagcaggaacaagacaagagtgacaattcttgccatatc 24
Query: 485 tactcaatgtagtacctgaagac 507
|||||||||||||||||||||||
Sbjct: 23 tactcaatgtagtacctgaagac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no350_e19.g1 MSMg01no350_e19.g1 CHROMAT_FILE:
MSMg01no350_e19.g1 PHD_FILE: MSMg01no350_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:11 2005
(473 letters)
>mm_chr10_103887813_103888684
Length = 872
Score = 737 bits (381), Expect = 0.0
Identities = 441/475 (92%), Gaps = 27/475 (5%)
Strand = Plus / Plus
Query: 1 atttatcaaaataatccatgttaggacatccagatacacacacacacacacacacacaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atttatcaaaataatccatgttaggacatccagatacacacacacacacacacacacaca 282
Query: 61 cacacacacacacacacacacacacacacacacacacacacaaataaatgttttggtgta 120
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 283 cacacacacacacacacacacaca------------------aataaatgttttggtgta 324
Query: 121 ttcccctaaaataaaataatatattataaga-tgttggaattttaattttcttagtcagg 179
|||||||||||||||||| |||||||||| | ||||||||||||||||||||||| |
Sbjct: 325 ttcccctaaaataaaatagtatattataa-actgttggaattttaattttcttag----g 379
Query: 180 gtttgtattcctacacaaaacatcatgaccaagaaacaagttacttttaggagaatggct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtttgtattcctacacaaaacatcatgaccaagaaacaagttacttttaggagaatggct 439
Query: 240 gtactgttggaggcattgtagtgtttagtaaaatgttgaagttagatattagcatgtaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtactgttggaggcattgtagtgtttagtaaaatgttgaagttagatattagcatgtaag 499
Query: 300 aggatgctatgaatgaatgacagaacactgactgtaatccatttcatctgacaaactggt 359
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 500 aggatgctatgaatgaatgacagaacactgactgtaatccatttcatgtgacaaactgat 559
Query: 360 cagaattgtgtaatattctgcaactagcaccaaacaaacagatatttgaacaccctaata 419
||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct: 560 cagaattgtgtaatattctgcaactagcaccaaacaaacagttat--gaacaacctaata 617
Query: 420 attcaactgagtcatgtttgcaaatgtaacacttaatggagtg-aaaatgactac 473
||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||
Sbjct: 618 attcaactgagtcatgtttgcaaatgtaatacttaatggagtggaaaattactac 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 872
Length adjustment: 10
Effective length of query: 463
Effective length of database: 862
Effective search space: 399106
Effective search space used: 399106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
