BAC Information

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BAC

Clone NameMSMg01-350J06
Chromosome10 (Build37)
Map Location 24,502,638 - 24,502,890
singlet/doubletsinglet
Overlap geneEnpp3
Upstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1
Downstream geneCrsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350J06.T7 (MSMg01no350_j06.b1)MSMg01-350J06.TJ (MSMg01no350_j06.g1)
ACCAG462157AG462158
length780765
length of high quality
(start - end)
259 (54 - 312)476 (85 - 560)
definitionCHROMAT_FILE: MSMg01no350_j06.b1 PHD_FILE: MSMg01no350_j06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:33 2005CHROMAT_FILE: MSMg01no350_j06.g1 PHD_FILE: MSMg01no350_j06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:42:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTCGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACATGAGTTGCCGACGATGCCAAGGGCAGAGAGACTG
TCCCTGGTTGCAGGCTAGGCTGTCAGTACAGTTCTTTATTATTCTAAAGC
TAACTTCCTTGTTAGCAGAAGACCCCATTCCATCTCCAGGCCCAGAGAGG
TGTTTGTGCATTTCCCTGTCTGCATGACAGGGTAGGATTTTAGCAATTTT
CTGCTTTCTAATTCAGAGATTACTCCGTGCGCGTGCTGTGGTTTGAGAAA
ATTACATAGAAGGATGTTTGGAGATTCCCATTTTTTACTGTAGATCAGCT
CCCTGTCTGAGGAATCCGGCTTTAAATAAGCTCTTTGGCGCACCGGCGCA
ATTGGTTGGTCTTTAAGTTTTACGGACCCCCCGTTTCTCTGAGGTTTTGG
TGGGTGTTTGTCCCTTCCTGTTCCCTTCTTTATACTCTTCTGTTCATCCT
ACCTCCTCCTCGCCGCTCTATTCTTCTTGTCATTCTCTGTTTTATTTTAA
CCCCCGTTCTTTTTTTTTCCTCTTTTTCTTACTTCCTCTTTCTTAATCTT
TCTCTATTTCTTCACCTCCCTCTTTTTTATTTTTTTTATCTTTCCTCTTT
ATATTTTTCTTACTTCCACATATTCCCTTTTCGTTTTTTCCTTCCCCTTA
CTTTTTTTCGCTCCTTATTCTCTCCTTTACCGTTTCTTTCTCTTTTCCTC
TCTTTCATACTTTTTTTCTCTCTTCCTATA
NNNNTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTACTCGTATTAGTT
GATCATCTGTTAACACACAACGTTTCAGTTAGGTGTACATTTTCTCTATA
TTTATCTTTTTAAAATGTTTATTATTTTTATGTATGCATATGTGCATGTG
CCCACATGAGTGTGCATATATATATACACACACACACAGAAATGTCTGAA
TATGTATGTATATATGTCATATATACATATGACATGTGTGCAGGTTCCCA
CAGACAACCAGAAGATATAGATCCCAGGAACTGAAGTTACACATGATATG
AGCCTCCTGATGTGGGTGCTGTAAACTGAACCAGGTCCTCTGCAAGAGCA
CTTAGCACTTCAATCACTGAGCCATCCCAGTGAGGTGGCTCAGCTGGAAA
AGGCACTTCTTCAAACCTAACAACCTTAACTCTGTCCCCAGAACTCATTG
CAAATGGAGACACCGACTTCCAAATGTTGTCCTCTGACCTCTAACAGCAC
ACCATGGTGCAGTGTGTTCACAAGCATCGTGTAAATTAAAAACTCTTTAA
ATATACCATGTTTCTTCACAAAAACTTTAATTAAAATACTTAAGGTACCC
TCCTTTAAGCCTAGTCTTTGGATGCTATAACCGACTTTAACAATTTATTA
ATAAATAAGTTCCCTCTCACAGCCCCCCCCTATTTTATCCCTAATCTACA
CCCTCCGCCCACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_j06.b1 MSMg01no350_j06.b1 CHROMAT_FILE:
MSMg01no350_j06.b1 PHD_FILE: MSMg01no350_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:42:33 2005
         (259 letters)



>mm_chr10_24502434_24503090
          Length = 657

 Score =  412 bits (213), Expect = e-119
 Identities = 244/257 (94%), Gaps = 6/257 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatgagttgcc--gacgatgccaagggcagagagactgtccctggttgcaggc 62
           |||||||||||||    |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaattcacatgag----cgggacgatgccaagggcagagagactgtccctggttgcaggc 402

                                                                       
Query: 63  taggctgtcagtacagttctttattattctaaagctaacttccttgttagcagaagaccc 122
           |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 401 taggctgtcagtacagttttttattattctaaagctaacttccttgttagcggaagaccc 342

                                                                       
Query: 123 cattccatctccaggcccagagaggtgtttgtgcatttccctgtctgcatgacagggtag 182
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 341 cattccatctccaggcccagagaggtgcttgtgcatttccctgtctgcatgacagggtag 282

                                                                       
Query: 183 gattttagcaattttctgctttctaattcagagattactccgtgcgcgtgctgtggtttg 242
           |||| |||||||||||||||||||||||||||||||||||| |||| ||| |||||||||
Sbjct: 281 gattctagcaattttctgctttctaattcagagattactccatgcgtgtgttgtggtttg 222

                            
Query: 243 agaaaattacatagaag 259
           |||||||||||||||||
Sbjct: 221 agaaaattacatagaag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 657
Length adjustment: 9
Effective length of query: 250
Effective length of database: 648
Effective search space:   162000
Effective search space used:   162000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)