Query= MSMg01no351_c09.b1 MSMg01no351_c09.b1 CHROMAT_FILE:
MSMg01no351_c09.b1 PHD_FILE: MSMg01no351_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:20 2005
(482 letters)
>mm_chr10_122642039_122642920
Length = 882
Score = 768 bits (397), Expect = 0.0
Identities = 461/489 (94%), Gaps = 14/489 (2%)
Strand = Plus / Plus
Query: 5 gaattcaatcctgattatgaggctacttgagggcctcaggatacgcggttggacggttac 64
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 197 gaattcaatcctgaatatgaggctacttgagggcctcagaatacgcggttggacggttac 256
Query: 65 taatgtgaatgtttagacaaatttatattcattaagaccacaaaattgttatgtcatagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taatgtgaatgtttagacaaatttatattcattaagaccacaaaattgttatgtcatagc 316
Query: 125 aaacggtttagttaaaatcgaggagaaaagtaatggatcatatcaaagacatccaactgc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaacggtttagttaaaatcgaggagaaaagtaatggatcatatcaaagacatccaactgc 376
Query: 185 cgggcggtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcggattt 244
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct: 377 cgggcggtggtggcgcacgcctttaatcccagcacttgggaagcagaggcaggcagattt 436
Query: 245 ctgagttcgaggccaacctggactacaaagtgagttccaggacagccagggctacacaga 304
||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct: 437 ctgagttcgaggccagcctggtctacagagagagttccaggacagccagggctacacaga 496
Query: 305 gaaatcctgtcttgtaaaaccacnaaaaaaaaaaaaaaaaaaaaa----------ggata 354
|||||||||||||||||||||| ||||||||||||||||||||| ||| |
Sbjct: 497 gaaatcctgtcttgtaaaacca--aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggaca 554
Query: 355 tccaaatactgaaagtgttaaaatgaatagtaagtataactttactcatttttttttttt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tccaaatactgaaagtgttaaaatgaatagtaagtataactttactcatttttttttttt 614
Query: 415 gtgtgtgtg-tgaagaatttttcttgctttgccttgttcttgtttttatgagattatgag 473
| | | || |||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 615 tttttt-tggtgaagaatttttcttgctttgccttgtttttgcttttatgagattatgag 673
Query: 474 acatggtct 482
|||||||||
Sbjct: 674 acatggtct 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_c09.g1 MSMg01no351_c09.g1 CHROMAT_FILE:
MSMg01no351_c09.g1 PHD_FILE: MSMg01no351_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:20 2005
(500 letters)
>mm_chr10_122776536_122777435
Length = 900
Score = 342 bits (177), Expect = 3e-98
Identities = 195/201 (97%)
Strand = Plus / Minus
Query: 27 tggaaactggagggacagactagaaggaagagaaaagaccagcctgtggtttatacacaa 86
||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct: 396 tggaaactggagggacagactggaaggaagagaaaacaccggcctgtggtttatacacaa 337
Query: 87 caatgtcttcatgaaaccgaatagtactatgggtcaagtttaaaactcagatatggttca 146
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct: 336 caatgtcttcatgaaaccgaacagtactgtgggtcaagtttaaaactcagatatggttca 277
Query: 147 agttcagcctcctttttacctaatggtgtaccatcagatgtaaaaggaagtttgagtaca 206
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agttcagcctcctttttacctgatggtgtaccatcagatgtaaaaggaagtttgagtaca 217
Query: 207 agacaataaaagctcaaacaa 227
|||||||||||||||||||||
Sbjct: 216 agacaataaaagctcaaacaa 196
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
