BAC Information

Click to search

BAC

Clone NameMSMg01-352D17
Chromosome10 (Build37)
Map Location 82,714,629 - 82,715,052
singlet/doubletsinglet
Overlap geneSlc41a2
Upstream geneLOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
Downstream geneD10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225, C230099D08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352D17.T7 (MSMg01no352_d17.b1)MSMg01-352D17.TJ (MSMg01no352_d17.g1)
ACCAG463410AG463411
length780783
length of high quality
(start - end)		465 (48 - 512)424 (78 - 501)
definitionCHROMAT_FILE: MSMg01no352_d17.b1 PHD_FILE: MSMg01no352_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:42 2005CHROMAT_FILE: MSMg01no352_d17.g1 PHD_FILE: MSMg01no352_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGGGCTCTCGCTGGGTTCTGCAGACTTTGGATACCTGGGTTT
ACAACACTGGCTGCCCCCCCTGTACTGACCAAGGAAAGTGGAGAATTTAG
AAGGAGGCCCTGCTGACTGCGCCAGCCTTGGCACTGCCAGATCTAACCAA
GCCCTTCATCCTCTATGTTGATGAGAGGGCGGGGGTGGCCAGAAGAGTTC
TTTCTCAGGCTCTAGGGCCGTGGGAGAGGCTGGTAGCATATTTGTCTAAG
AAGCTGGACCCAGTGGCCAGTGGATGGCCCACACGTTTAAAGGCCGTTGC
TACAGTAGCCCTACTCGTTAAGGATGCTGACAAATTAACTCTGGGACAGC
AAATAACTGTAGTAGCCCCCCACTCTCTTGAAAGCATTATCCGTCAGCCC
TCAGACCGATGGATGACAAATGCCTGGATGACTCACTACCAGAGTCTGTT
GCTGACTGAATGGGTCGTGTTTGTTTCTCCTGCTAATCCTCAACCTGCCT
GCAAAGTGATCTACGTGACCAGCCGTGTGTAGGGGTTTCAAATTGGTACA
CAGACGGTAGCAGCTTCCTAATGAAAGCTTTGCACACAACCCTTTCCCAG
GGGTGGATCTTCTCTCACAAAAAAAAAACGCCCACTTTGTCTTTATTTTA
CCATCCCCAAATATAATTATTTCCCCATCATTAAAACCCCACCCTCCTTA
TTTATCTCACCTCTCCCCCCCCACCCTTTG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAGGGATAAAAGGCTAGAAAC
TTCCCCTTTCTTCCTCCCAGAGATGTTTTTAGCACCAAAATGTTAAGATG
GCCTGCACACATCTATCATCAGCACAGTGAAAGGGAAAAAGACAAAATAG
TAAAACCGAGTTTTGGTTTCATGTTTAGCCGAAGCAAGCAGACTATAAAA
CCCTAAGAGTCCTGGCTGGAATCCTCTCTGTCCACCTTCCCTAGCCAGCT
TCCTCCAGGGCAAGTCCCTTGAAGGCCAAGCGCAAGAACCTCCTCGGGCA
TCCTTTTCATCTGCCTCTGAAGGCTCCGGCACTCCTCTCTGTAGGGAGTA
TCCAGTCCCTGCGGTTAAACAAGAAGTCAGTCCTGAGAAGCTGGGGCAGC
TGAAACACTAAGGCTTATGGGAAGAGACCCAAGTGAAAAAGGAAAGAATT
ACTAACATTCAGGAAAATAACACACTTCCAACGAAATGCTTGTCGAGCAA
GCCACAGTGAAAAAATTTAAAGTAGGGTTAATTAATTACTGACAACCCTT
TTTCTTTTTCCCTCCTTCCTTTTTTTCTTTTCCCTATAGGACCCCCTCCC
ACCAATATCACATCTTTCTGCCCATATTTCTTTCCCCTCCATTGCTTTTG
ATCTTTCTTTTTCCTTTTTTATATATACACCTTCCCTTATCCTCCCCCCC
CTTACTCCCTTTCTTTCCCTCATTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_d17.g1 MSMg01no352_d17.g1 CHROMAT_FILE:
MSMg01no352_d17.g1 PHD_FILE: MSMg01no352_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:42 2005
         (424 letters)



>mm_chr10_82714429_82715252
          Length = 824

 Score =  812 bits (420), Expect = 0.0
 Identities = 423/424 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaagggataaaaggctagaaacttcccctttcttcctcccagagatgtttttagcacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaagggataaaaggctagaaacttcccctttcttcctcccagagatgtttttagcacca 260

                                                                       
Query: 61  aaatgttaagatggcctgcacacatctatcatcagcacagtgaaagggaaaaagacaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgttaagatggcctgcacacatctatcatcagcacagtgaaagggaaaaagacaaaa 320

                                                                       
Query: 121 tagtaaaaccgagttttggtttcatgtttagccgaagcaagcagactataaaaccctaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtaaaaccgagttttggtttcatgtttagccgaagcaagcagactataaaaccctaag 380

                                                                       
Query: 181 agtcctggctggaatcctctctgtccaccttccctagccagcttcctccagggcaagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtcctggctggaatcctctctgtccaccttccctagccagcttcctccagggcaagtcc 440

                                                                       
Query: 241 cttgaaggccaagcgcaagaacctcctcgggcatccttttcatctgcctctgaaggctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgaaggccaagcgcaagaacctcctcgggcatccttttcatctgcctctgaaggctcc 500

                                                                       
Query: 301 ggcactcctctctgtagggagtatccagtccctgcggttaaacaagaagtcagtcctgag 360
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 501 ggcactcctctctgtagggagtatccagtccctgtggttaaacaagaagtcagtcctgag 560

                                                                       
Query: 361 aagctggggcagctgaaacactaaggcttatgggaagagacccaagtgaaaaaggaaaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagctggggcagctgaaacactaaggcttatgggaagagacccaagtgaaaaaggaaaga 620

               
Query: 421 atta 424
           ||||
Sbjct: 621 atta 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |