BAC Information

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BAC

Clone NameMSMg01-352I18
Chromosome10 (Build37)
Map Location 47,143,939 - 47,144,376
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041632, LOC668252
Downstream geneLOC100042387, LOC100041663, LOC100042398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352I18.T7 (MSMg01no352_i18.b1)MSMg01-352I18.TJ (MSMg01no352_i18.g1)
ACCAG463647AG463648
length803834
length of high quality
(start - end)
441 (47 - 487)122 (77 - 198)
definitionCHROMAT_FILE: MSMg01no352_i18.b1 PHD_FILE: MSMg01no352_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:08 2005CHROMAT_FILE: MSMg01no352_i18.g1 PHD_FILE: MSMg01no352_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GGATTAAAAGATTATCCCAACACTGCCAGGTTTTGGATTACTCATTTATC
AACTGATTTTCTGTAAATGTATTCTATAGACAGTTGTATCCTTGAATTAT
TGTATTTCATTGAGTTATTACTGAACCATAAGAAATTAAAATGAGGCTAG
TTAATTTAAGATTGGGGTGACCTCTGTCACCCACAGGGAGGCAGCGAAAT
TCTGAGGCACCTGACAGTGGCTTGTGGGAAGACAGAGCAGTAGATGATGG
CTGGTATTTCATGTGTTATAATAACACGAATTAAACTGTGTCTTAGTTCC
TGGAAAGCAAAATGATTTTGGAGAACAGAATGATACAGTCTCATTTGTAA
TTCAGTGATGGAACACTCACCTCCTTTGGGTAAGACCTAGGTTGAATTCT
CAGCACCTGTGGGAAAATGAAACAAAATGAAAAATTGCCTGAGACTAGAC
TAGATTAAAGACCCCTGAAGAGAATTGAGTAGATAGCTTAGTACAATTCT
GGATAAACAAAATGGCTATTAAATCTACGGAAAAAGACCGAATAAAATTA
CTTACAATATTTCCCGTCACATTTTACCCCACGAAACTTTATTTGGCACG
TCCTTTAAATTTTTTTTTTTCCCATACCCTATCTTAATCCTTCCTTCTGC
AACTCTTACTTTTTTTTTTCTTCCGTTTTCCCCACCTCCATTTTTTTTCT
TACCCCCTCCCCAACTCCTCTTTATTTTCCCCCTTCCCCTCTCCCTATCC
CTT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAACCAGAGCCACACAGAG
AAACCCTGTCCTCGAAAAACCATTAAAAAACCCATATATATATATATATA
TATATATATATATATATATATATATATATATAATCATTTATTTAGTGAGG
GGAGAGNGCGNGGGGGGGGAGAGTGTGTGTGTGTGTGTGGCGGGGGGGGG
TGGGAGGGGGGGGGGCGTGAGAGAGACGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGCGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGAGGGGGAGAGAGA
CCGAGATGTTCCGATATCTATTTTCGGCTGGCCGGCGATGTCCTGCTCTT
TTTTCCGTTGGTTTCCTCGCCTTTTCTAGCTTTACCCCGCGGTTCGGGCC
CTTGCGGGGTCCTTTTCCGTTTTCGCTTGGGGGGTTCTAGGGGGGTTTCG
CGTTTTTCGCGTAGCTGGGGCGGCCGTCCTGGGGGTCGGCGGGGTTGGGG
GTCCGCGGGCGGGGATTGGGTGGTGTGGGGGGTTTTACGTTTGGTTGTTG
TTTTCCCGCTCGTCGGGCCCCGTTGCCCGTCGGTGCGTCGTCCCTCCCGT
GGCTCGCGGGCTTGCCTTCTTCCTCGTGTAGCCTGTGGCTCCCTGCCGGT
TTGCCGCGGGCCCCTCCCCTTGCTTCGCGCCCGCCCTGCCGTGTGTGGCG
TTTCGCCGGTTTTGGCGCTCCCTCGGTCATCTGTCGTGACGGGCGGGGCG
CGGTCGATGCCGCGTGCGGTTGGGCCTTGCTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_i18.b1 MSMg01no352_i18.b1 CHROMAT_FILE:
MSMg01no352_i18.b1 PHD_FILE: MSMg01no352_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:08 2005
         (441 letters)



>mm_chr10_47143736_47144576
          Length = 841

 Score =  816 bits (422), Expect = 0.0
 Identities = 434/438 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gggattaaaagattatcccaacactgccaggttttggattactcatttatcaactgattt 63
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 gggattaaaagagtatgccaacactgccaggttttggattactcatttatcaactgattt 582

                                                                       
Query: 64  tctgtaaatgtattctatagacagttgtatccttgaattattgtatttcattgagttatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tctgtaaatgtattctatagacagttgtatccttgaattattgtatttcattgagttatt 522

                                                                       
Query: 124 actgaaccataagaaattaaaatgaggctagttaatttaagattggggtgacctctgtca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 actgaaccataagaaattaaaatgaggctagttaatttaagattggggtgacctctgtca 462

                                                                       
Query: 184 cccacagggaggcagcgaaattctgaggcacctgacagtggcttgtgggaagacagagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 cccacagggaggcagcgaaattctgaggcacctgacagtggcttgtgggaagacagagca 402

                                                                       
Query: 244 gtagatgatggctggtatttcatgtgttataataacacgaattaaactgtgtcttagttc 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 401 gtagatgatggctggtatttcatgtgttagaataacacgaattaaactgtgtcttagttc 342

                                                                       
Query: 304 ctggaaagcaaaatgattttggagaacagaatgatacagtctcatttgtaattcagtgat 363
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 341 ctggaaagcaaaatgattttggagaacagaatgatacagtttcatttgtaattcagtgat 282

                                                                       
Query: 364 ggaacactcacctcctttgggtaagacctaggttgaattctcagcacctgtgggaaaatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ggaacactcacctcctttgggtaagacctaggttgaattctcagcacctgtgggaaaatg 222

                             
Query: 424 aaacaaaatgaaaaattg 441
           ||||||||||||||||||
Sbjct: 221 aaacaaaatgaaaaattg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)