Query= MSMg01no353_d23.b1 MSMg01no353_d23.b1 CHROMAT_FILE:
MSMg01no353_d23.b1 PHD_FILE: MSMg01no353_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:03 2005
(368 letters)
>mm_chr10_17920324_17921091
Length = 768
Score = 383 bits (198), Expect = e-110
Identities = 242/276 (87%), Gaps = 30/276 (10%)
Strand = Plus / Plus
Query: 4 ggaattcttcttgaatcatttcccaaagcgcaggtgctgcatgaaatcgcacaatgggcg 63
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcttgaatcattttccaaagcgcgggtgctgcatgaaatcgcacaatgggcg 263
Query: 64 cacaatggaagtgtggattaacaaaacacagaaacatacatgaagtgcccctgcctcctc 123
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacaatggaagtgtggattaacaaaacacagaaacatacatgaagtgc------------ 311
Query: 124 tccaaacctttccctacaccctgcctccaccccagacaatcacgacgtcctggaggacca 183
||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 312 ------------------ccctgcctccaccacagacaatcacgacgtcctgaaggacca 353
Query: 184 cagggaactcaggaagcacgtgtggtgtgtctcctaggtaacagacaaaagtcttggggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cagggaactcaggaagcacgtgtggtgtgtctcctaggtaacagacaaaagtcttggggg 413
Query: 244 agaaaacactctctttgcaacatagccaggttcatt 279
||||||||||||||||||||||||||||||||||||
Sbjct: 414 agaaaacactctctttgcaacatagccaggttcatt 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space: 272481
Effective search space used: 272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_d23.g1 MSMg01no353_d23.g1 CHROMAT_FILE:
MSMg01no353_d23.g1 PHD_FILE: MSMg01no353_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:04 2005
(487 letters)
>mm_chr10_18111089_18111975
Length = 887
Score = 895 bits (463), Expect = 0.0
Identities = 481/487 (98%)
Strand = Plus / Minus
Query: 1 ataataaaaattcattggataatgtgagaaggaaggttttagcattttcctttcgccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ataataaaaattcattggataatgtgagaaggaaggttttagcattttcctttcgccttt 628
Query: 61 tagaaatatactgagacaacacagaatggcagacaccacagatatttaaaccaggcggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tagaaatatactgagacaacacagaatggcagacaccacagatatttaaaccaggcggag 568
Query: 121 ctggaccttgatttcgacataaagattcactgaagcacggcaatagtgccaccttgtggg 180
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctagaccttgatttccacataaagattcactgaagcacggcaatagtgccaccttgtggg 508
Query: 181 acagccatgactacaccaaaactcaagaggcgatccatatccagaaaaatcactgtcatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 acagccatgactacaccaaaactcaagaggcgatccatatccagaaaaatcactgtcatt 448
Query: 241 tttagatgcatctttctgagaatttgtagaccacaatcaaccaaaggacaggtaacaggc 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttagatgcatctttttgagaatttgtagaccacaatcaaccaaaggacaggtaacaggc 388
Query: 301 tatgagtaccggatctccaaggagtaaaggcactggtagttaataccaccctgttaatgg 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tattagtaccggatctccaaggagtaaaggcactggtagttaataccaccctgttaatgg 328
Query: 361 ctcaaggtgaatggataaagagaccgaagcacggaagccttcagataccatttaattgac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 ctcaaggtgaatggataaagagaccgaagcacggaagccttcagataccatttaactgac 268
Query: 421 cgtgaccctgagaccaagaagtaatatttaaacatttagtcttatatccagatagcattt 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cgtgaccctgaaaccaagaagtaatatttaaacatttagtcttatatccagatagcattt 208
Query: 481 ggaggca 487
|||||||
Sbjct: 207 ggaggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
