BAC Information

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BAC

Clone NameMSMg01-353P09
Chromosome10 (Build37)
Map Location 87,790,511 - 87,790,908
singlet/doubletsinglet
Overlap gene1200002N14Rik
Upstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
Downstream geneGnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353P09.T7 (MSMg01no353_p09.b1)MSMg01-353P09.TJ (MSMg01no353_p09.g1)
ACCAG464709AG464710
length786763
length of high quality
(start - end)
---399 (80 - 478)
definitionCHROMAT_FILE: MSMg01no353_p09.b1 PHD_FILE: MSMg01no353_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:59 2005CHROMAT_FILE: MSMg01no353_p09.g1 PHD_FILE: MSMg01no353_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCTTTCGCCTATTTTCAAGACAGGCTTTCTCTGAGCAATCA
TGACTGACCTGCAACTCACTCATGTACAGCAAGTTGACCTCAAACTCAAT
AATGCCGCATAGCCTCTTGTCCTCCCAAGAGATGGGTATCAAATGCGAGT
GCTACCACTGCCTGGATTGACCTTCAGACTCATTTACACCTGCTATAAAT
AAGTCTCGATTTGACTCATTGCTTGAGCGATTAATCTCTTGACTCTGTTC
CATCACTATCCTTGCCCTCTTCCAAGTTCTTATGAACATCGACCGAGGCC
CTGTGATGATTATGTTTTGTCCCAGAGTTGATTGCTTCTTCTACTTCACA
AAGAGCACATTCCTCAAAATCACGCCCTTGTCTTTACTAAAATTATCATT
AAAATGCCCAAGAAATGTAAGCGAAAACACCTTCTGATAACTTGCTGGAG
ATTTTCAACGTGTAAGCGTGTGAGTGCGTGTGTAATGTAAATAAAACCAT
GTTTCTCATAAATCCTACCTAAATTTTTAACCCACTTACCACACTTTTTT
TAAACTACCCCCCCGTTATCAGTTCCCCCCACTTTTTTTTTACCTATATA
AATACCCAATATCTAAATCACCCTTATTCTACCCCATAACCTTATTTTTA
CTTGATCATATTACTATCTATATTTCTTGACTAACCTTTCTTATTTTTCG
GCAATCTAATTTAACATTAAATATTTTATATACATN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTCAGCATTATCCCCG
TAGCTGTCTTGATGGCTTCCATTGAGAACCTTGGGTGCTTTTTGAAAACT
CCTGCACTAATCACACGGTTCCTCTGCCCATCAATGCACCCACACCCTTC
CTCTCACCTCTTAGCGTTAGCCTATCACCCAACATTTTTCTGAAACTGTT
TTTTTTTTTTGAAAAAACACTTTCTTTCTGCTTAAATCCAGGACCCTTGT
TCCTCGAACTGCTCAGCTATGTCCGCCAAGAACAACTATTTCCCTTTTTA
AAAAATGTCCTTCTCTTGGTCTCTGGGATAGATACTATGCCCTAACCTGA
GGTGGGAATTAACTATTGCTTCTGTGGTTCTACAACACACTATCAGACTT
CAATTCATAATCGTTCTTACTTTCAAAGTGCTATGCTTGGCAGAAGACGG
CCACTGTTTGCCCATTGAACTCCAGGCCTCCTTGGGGACCCACTTCCCCA
CAGCTGTGCTTGCTCCTGGACATTCCCCTATACTTCAGTTCACGAGAACT
GTCTGATAGCAGCTCATTACTACCCGTTTTCTTCCATTGTCCCAGTTGTC
CTCCCGTTTGTTTCCGTTGACCAATTTTTCCCTTGCCCCTCGTAAATCCC
CCTGTTTACCTCTTCCTTTTTTTCCCCTTCCCCCCAGCTTTTTTCTATTT
ATCCCGCTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_p09.g1 MSMg01no353_p09.g1 CHROMAT_FILE:
MSMg01no353_p09.g1 PHD_FILE: MSMg01no353_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:59 2005
         (399 letters)



>mm_chr10_87790311_87791108
          Length = 798

 Score =  756 bits (391), Expect = 0.0
 Identities = 397/399 (99%), Gaps = 1/399 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccttcagcattatccccgtagctgtcttgatggcttccattgagaaccttgggtgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccttcagcattatccccgtagctgtcttgatggcttccattgagaaccttgggtgct 260

                                                                       
Query: 61  ttttgaaaactcctgcactaatcacacggttcctctgcccatcaatgcacccacaccctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttgaaaactcctgcactaatcacacggttcctctgcccatcaatgcacccacaccctt 320

                                                                       
Query: 121 cctctcacctcttagcgttagcctatcacccaacatttttctgaaactgttttttttttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 cctctcacctcttagcgttagcctatcacccaacatttttctgaaact-ttttttttttt 379

                                                                       
Query: 181 tgaaaaaacactttctttctgcttaaatccaggacccttgttcctcgaactgctcagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgaaaaaacactttctttctgcttaaatccaggacccttgttcctcgaactgctcagcta 439

                                                                       
Query: 241 tgtccgccaagaacaactatttccctttttaaaaaatgtccttctcttggtctctgggat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgtccgccaagaacaactatttccctttttaaaaaatgtccttctcttggtctctgggat 499

                                                                       
Query: 301 agatactatgccctaacctgaggtgggaattaactattgcttctgtggttctacaacaca 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agataccatgccctaacctgaggtgggaattaactattgcttctgtggttctacaacaca 559

                                                  
Query: 361 ctatcagacttcaattcataatcgttcttactttcaaag 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctatcagacttcaattcataatcgttcttactttcaaag 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space:   307710
Effective search space used:   307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)