BAC Information

Click to search

BAC

Clone NameMSMg01-354A18
Chromosome10 (Build37)
Map Location 67,697,609 - 67,840,056
singlet/doubletdoublet
Overlap geneArid5b, LOC100040136
Upstream geneJmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
Downstream gene1700040L02Rik, EG665342, Tmem26, A930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354A18.T7 (MSMg01no354_a18.b1)MSMg01-354A18.TJ (MSMg01no354_a18.g1)
ACCAG464773AG464774
length746770
length of high quality
(start - end)		453 (47 - 499)492 (77 - 568)
definitionCHROMAT_FILE: MSMg01no354_a18.b1 PHD_FILE: MSMg01no354_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:05 2005CHROMAT_FILE: MSMg01no354_a18.g1 PHD_FILE: MSMg01no354_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,697,609 - 67,698,057)(67,839,565 - 67,840,056)
sequence
NCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAAAATGGTACCCCACTCCTTGTTTCTGTGTTAGATTTCATAA
GGGAAGACAGAATCCTTGATATTCTAATGTCACTTTTTGTTTTGCTTCTC
AAACTAAGAAACTCCCAGGCTTAGACTTTCTCTCTAGTCGGCTGCCCATC
TTCAAAGGATGGATCAACATAGACCATTTTGGAGACCTTTCAGGTCCATG
GGAATTCCAAACAGAAAGATTTTGGACAGGAGTGCTCTCCATATGGGATG
GCGGTGTGTGTGGAAAGCAGAGGCAACCAATGCCTGTCAATCAACTCAGA
CACTAGGAGACTTGGCAAAGACTTCCTTCCCAGCTGGGTTCAGGAAACAT
AGATGAATATTTCTTATTGGAAAACTATTTACTGGTCCTTTCCGTCACGG
CTTCAGGATAACTTCAACTATTTAGCGAGAGAGTAAAGTTGAATTTTTGA
TTTCTAATAAAATAAAAAGTCATTTTCTCCCCTCCCTTTTGAATTGCTAG
TTTGTGGGGNTCTGGNTATTCTTAGATAANATTCTGAACGTCTTGGCTGT
CGATTTATGCATGTTGAAATGCATTCATTTACAAAACTAACTTATTCGAT
CTATGCGTGTGCGTGTATGCCTTTCTCNCCATCCTCCCAACATGTGGCGA
GNATCGACCTCGCCGCCCGCGACTATNTACCTCTTCCCTCCGNNTG

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCAGGGGGGCGGGCATAAGAGGA
GAATCCTGGGGACTCACTGGGTGTTTGAAGGGCTCATCTGTCAATCACTC
TTGGAATTACTTGGTAGCTGGAAGCAAGAGGATCAGAAATTCAAGGTTAT
CCTCAATTGGGTTTGGGTCCAGCCTGGGCTATATGAGATCCTATCTAAGA
AAAGAAAAGTAAAGAGGAAAGAGGAAGTGGGGAGTTGAGTCTTAGAAAAA
AGATTTAGGGAAAACATTCCAAAGGAATGGAGAGATGTCTGTTGAAATAG
GAGGTAACCAGTACTACAGGCATCTCTTCCTAGAGGCACAATGGGGGAAA
AACGGAGAGGCTATTTAAAGGACAATAAGCATATTAGCACCAACCTACAA
AAGGCTTGTGATGATCCTGCGGGCTTACTTTTAGGCTCACTGTAGGGTTT
ATCTTGGTGAAGCATGGAAGGCATGAGACTGCTTGACGTTTCTTCAAAAG
GGGGTGAAAGGAAAGAAGCTGAGAGGAAATAAAAGCATTTGGTTTATAGC
TTCTCTAAGCAATGCTGAAGAATGGAGTGTCCCCTTGGACAACGGTGTGT
CAGGGAAAAACTTCTCTTTTCCTATTGACTGGAAAAAAGTAATTGTTGAA
ATTGGGGGTGTTATGTTCTCTTATATATTCTATATGCTATCAATAATCCT
TCTTTTTCTTTAACTTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_a18.b1 MSMg01no354_a18.b1 CHROMAT_FILE:
MSMg01no354_a18.b1 PHD_FILE: MSMg01no354_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:05 2005
         (453 letters)



>mm_chr10_67697405_67698257
          Length = 853

 Score =  861 bits (445), Expect = 0.0
 Identities = 448/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaaaatggtaccccactccttgtttctgtgttagatttcataagggaagacag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaaaatggtaccccactccttgtttctgtgttagatttcataagggaagacag 264

                                                                       
Query: 65  aatccttgatattctaatgtcactttttgttttgcttctcaaactaagaaactcccaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatccttgatattctaatgtcactttttgttttgcttctcaaactaagaaactcccaggc 324

                                                                       
Query: 125 ttagactttctctctagtcggctgcccatcttcaaaggatggatcaacatagaccatttt 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 ttagactttctctctagtcggctgcccatcttcaaaggatgtatcaacatagaccatttt 384

                                                                       
Query: 185 ggagacctttcaggtccatgggaattccaaacagaaagattttggacaggagtgctctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggagacctttcaggtccatgggaattccaaacagaaagattttggacaggagtgctctcc 444

                                                                       
Query: 245 atatgggatggcggtgtgtgtggaaagcagaggcaaccaatgcctgtcaatcaactcaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atatgggatggcggtgtgtgtggaaagcagaggcaaccaatgcctgtcaatcaactcaga 504

                                                                       
Query: 305 cactaggagacttggcaaagacttccttcccagctgggttcaggaaacatagatgaatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cactaggagacttggcaaagacttccttcccagctgggttcaggaaacatagatgaatat 564

                                                                       
Query: 365 ttcttattggaaaactatttactggtcctttccgtcacggcttcaggataacttcaacta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcttattggaaaactatttactggtcctttccgtcacggcttcaggataacttcaacta 624

                                        
Query: 425 tttagcgagagagtaaagttgaatttttg 453
           |||||||||||||||||||||||||||||
Sbjct: 625 tttagcgagagagtaaagttgaatttttg 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_a18.g1 MSMg01no354_a18.g1 CHROMAT_FILE:
MSMg01no354_a18.g1 PHD_FILE: MSMg01no354_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:05 2005
         (492 letters)



>mm_chr10_67839183_67840074
          Length = 892

 Score =  920 bits (476), Expect = 0.0
 Identities = 488/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaggggggcgggcataagaggagaatcctggggactcactgggtgtttgaagggctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 tgcaggggggcgggcataagaggagaatcctggggactcactgggtgtttgaagggctca 815

                                                                       
Query: 61  tctgtcaatcactcttggaattacttggtagctggaagcaagaggatcagaaattcaagg 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 tctgtcaaccactcttggaattacttggtagctggaagcaagaggatcagaaattcaagg 755

                                                                       
Query: 121 ttatcctcaattgggtttgggtccagcctgggctatatgagatcctatctaagaaaagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttatcctcaattgggtttgggtccagcctgggctatatgagatcctatctaagaaaagaa 695

                                                                       
Query: 181 aagtaaagaggaaagaggaagtggggagttgagtcttagaaaaaagatttagggaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aagtaaagaggaaagaggaagtggggagttgagtcttagaaaaaagatttagggaaaaca 635

                                                                       
Query: 241 ttccaaaggaatggagagatgtctgttgaaataggaggtaaccagtactacaggcatctc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttccaaaggaatggagagatgtctgttgaaataggaggtaaccagtactacaggcatctc 575

                                                                       
Query: 301 ttcctagaggcacaatgggggaaaaacggagaggctatttaaaggacaataagcatatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttcctagaggcacaatgggggaaaaacggagaggctatttaaaggacaataagcatatta 515

                                                                       
Query: 361 gcaccaacctacaaaaggcttgtgatgatcctgcgggcttacttttaggctcactgtagg 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 514 gcaccaacctacaaaaggcttgtgatgatcctgcaggcttacttttaggctcactgtagg 455

                                                                       
Query: 421 gtttatcttggtgaagcatggaaggcatgagactgcttgacgtttcttcaaaagggggtg 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 454 gtttatcttggtgaagcatggaaggcatgagactgcttgatgtttcttcaagagggggtg 395

                       
Query: 481 aaaggaaagaag 492
           ||||||||||||
Sbjct: 394 aaaggaaagaag 383


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |