BAC Information

Click to search

BAC

Clone NameMSMg01-354O02
Chromosome10 (Build37)
Map Location 127,821,221 - 127,821,690
singlet/doubletsinglet
Overlap geneAnkrd52
Upstream geneR3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a
Downstream geneSlc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354O02.T7 (MSMg01no354_o02.b1)MSMg01-354O02.TJ (MSMg01no354_o02.g1)
ACCAG465402AG465403
length765738
length of high quality
(start - end)		158 (52 - 209)468 (81 - 548)
definitionCHROMAT_FILE: MSMg01no354_o02.b1 PHD_FILE: MSMg01no354_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:10 2005CHROMAT_FILE: MSMg01no354_o02.g1 PHD_FILE: MSMg01no354_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATCAATTTCCCTGGGCTAGTGGCGCATGTCTTTAATCCC
AGCACTCGGGAGGCAGGCGAATTTCTGAGTTCAAGGCCAGCCTGGTCTAC
AGAGTTAGTTCCAGGACAGGGCTATAAAAAGAAAACCTGTCTCGAAAAAC
AAAAAACAAACAANCNNNAAGAATTCATCAACTCAGGGCTGGAGAGATGG
CTCAGNGNTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTTAATT
CCCAATAACTACATGGTGGCTCACAACCATCTGTAGTGGGGATCTGATGC
CCTCTTCCGGTATGTCTGAAGACAGTGACACTGTACTCATATACATGAAT
TCGTTTCGCAAATGAATCCGATTCTAANNAATTCATCCATTAATGGCTTG
TGTTTGGTGAGCATACTTATTGTTATTGACCCNTATATTTTTCCTCTATG
CATTTTCTANACCAGTCTATCTAGTCTGGCCCCACTTCCTAACGCTATCG
CAGTGACTCTTGACTGCGCTGGATATACCTCGCGACTTCTTCCGCCCCCT
CATGCTTGCNTTCGTCCGTCCCGGTACCTGCGATCTCTGCGTTNNCTGAG
TTCTTCCCCTCACCCCTATCGACTTTCCGCACCATTCAACCTCATCTTTT
TTGCTCCCGGTTACTTATCTCGTACCGGCCTCTGCTTGANCACGCGTATC
TTCCTCCCCTGNCTG

CCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGTTGATGTCCTA
GAACTCACAGAAAAGATCCTCTCAAGTGTTGGGATTGAAGGTATGCAATT
CACCTGGCTGTTTGAGATTGTTTAATAAAGTTTACTGAAGCACAATTTTA
GTCATAGCAGTCTTATCAGTGGTTTGCTCTCTAGGCAAATATTCCTGAAG
ACGTTTGGTTGTAATGTCTTGATGTTGGGAACGGTTTAACATTGTACTCT
ACAGTGAAATCCCCACCAGCAAAGCCCCAGGGTAATTCATCTGTAGTTTT
GTTTTGTTTTGAGAGAGAGAGTCTGACTGTATAACCCTGGCAGACCAGTA
ACTCACTGTGTAGACCAGGCCTCAAACTCTTCCTCCTGAGTGCTAAAATG
AAGGGCTGCACCACTACACCTGGCTTAATTCATCTTTTCTCCTTAGTACC
AGCTAAAAGGAGGCTCAGTGGCATCCTGCCTGCCCCGAATGAAACAAGAT
CATCCCAGGACCAATGCCCAGCACCTTAGCACCTAGAACACCTAGAACAT
GAAAGATAAGCACTCAGTTAAAGCAGCCCGTGCGAGTTGCTGTCCCAACC
TCCTAGGCAGCTCCCTGTTCCTTGAGAGGAGCTGCACCTCATATTTGTCC
TTCCCTACACATTCCCCACACTGCAAGCTAATCGACGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_o02.g1 MSMg01no354_o02.g1 CHROMAT_FILE:
MSMg01no354_o02.g1 PHD_FILE: MSMg01no354_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:10 2005
         (468 letters)



>mm_chr10_127821159_127822026
          Length = 868

 Score =  897 bits (464), Expect = 0.0
 Identities = 468/470 (99%), Gaps = 2/470 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtagttgatgtcctagaactcacagaaaagatcctctcaagtgttgggattgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 actatgtagttgatgtcctagaactcacagaaaagatcctctcaagtgttgggattgaag 473

                                                                       
Query: 61  gtatgcaattcacctggctgtttgagattgtttaataaagtttactgaagcacaatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gtatgcaattcacctggctgtttgagattgtttaataaagtttactgaagcacaatttta 413

                                                                       
Query: 121 gtcatagcagtcttatcagtggtttgctctctaggcaaatattcctgaagacgtttggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gtcatagcagtcttatcagtggtttgctctctaggcaaatattcctgaagacgtttggtt 353

                                                                       
Query: 181 gtaatgtcttgatgttgggaacggtttaacattgtactctacagtgaaatccccaccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gtaatgtcttgatgttgggaacggtttaacattgtactctacagtgaaatccccaccagc 293

                                                                       
Query: 241 aaagccccagggtaattcatctgtagttttgttttgtttt--gagagagagagtctgact 298
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 292 aaagccccagggtaattcatctgtagttttgttttgttttgagagagagagagtctgact 233

                                                                       
Query: 299 gtataaccctggcagaccagtaactcactgtgtagaccaggcctcaaactcttcctcctg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gtataaccctggcagaccagtaactcactgtgtagaccaggcctcaaactcttcctcctg 173

                                                                       
Query: 359 agtgctaaaatgaagggctgcaccactacacctggcttaattcatcttttctccttagta 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 agtgctaaaatgaagggctgcaccactacacctggcttaattcatcttttctccttagta 113

                                                             
Query: 419 ccagctaaaaggaggctcagtggcatcctgcctgccccgaatgaaacaag 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 ccagctaaaaggaggctcagtggcatcctgcctgccccgaatgaaacaag 63


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |