BAC Information

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BAC

Clone NameMSMg01-354O24
Chromosome10 (Build37)
Map Location 79,022,283 - 79,022,767
singlet/doubletsinglet
Overlap genenone
Upstream geneIlvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2
Downstream geneTheg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354O24.T7 (MSMg01no354_o24.b1)MSMg01-354O24.TJ (MSMg01no354_o24.g1)
ACCAG465445AG465446
length764779
length of high quality
(start - end)		448 (48 - 495)481 (79 - 559)
definitionCHROMAT_FILE: MSMg01no354_o24.b1 PHD_FILE: MSMg01no354_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:14 2005CHROMAT_FILE: MSMg01no354_o24.g1 PHD_FILE: MSMg01no354_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGTTCCTGTTATATAGGTGTTTAAATTGCATGGTTAGAGTTA
CATGAAGATATTTGTATTATTTGTAAATATTGTAAAGTGTTTTATTTCCC
TTATTTCTTTCTCAGTTAATTTATCATTTGTATAAAGGAGAACTATGTTT
TTTTTATTTTTTTATTTTTAGTTAATTTTGTATCTAGCCACTTTGCTGAA
GGTGTTCTCTGGTAGAATTTTTGGGGTTATTTGTATTTATTATATCATCT
GTGAATAGCAATCCTTTGACTTCTTTCATTCCAATTTGCATCCACTTGAT
TTCTTTTAGTTCTCTGATAGCTCAAAGTAAAACTTCAAGTACTGTATTGA
ATAGATTANAGAGAGTGGGTAGCCTTGTCCCTGATTTTAGTGGAATTGCC
TAAGTTTCTCTCCATGTAATTTGATGTTGGCTATTCATTTGCTGTATGTT
GTTTTTATAACATCTANATATGTGCCTTGTATCGCTGATTTCTCCAAGAT
TTTGAAAGGAATTAGTGTCATATTTTGNNGAAGTCCTTTTTCTTGCATCT
TATCCGATGANCCTTGATTTTTTTTTTCCTTTATTTANATAGTCTACTTA
TTTCACGGANCTTCTTTCTCTTTGCCCNCGTGTCCTCTTTGCAACGACCT
TACTTAATTTTTGCCTACATTTTCTTACGNGCTTCCTTGTTNANNCCCCT
TATTATTCCAGNTA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGGATACACA
AAGAAACCCTGTCTTAGAAAACCAAAATCAACCAGTCAACCAACCAACCA
ACCAAAACTAGCCAAGGCAGCTTTCTAGACAGGACATCCTGCAAAAGGAT
GGGGAGAAAGCTGGTTTCCCAAATGGAGCTTCTGGTAGCCAGGCTGCATC
TGGTAGTGACTAGGCACTGATGCCCTAAGATCTATTGGTAGACAGCAGGT
AGTTGCGGGATGTTGTGCTGGTGACTGGGCCCTGTACCAGTGAGAGAATG
CTATAGATACAAGGGTTGCTTCTGGGTTATAGCACACGGTATGGCTATCC
TGCCATCCATTCTCAGAGTAGCTTTGACACAGCTCCTTATAGTATAAGGT
GCCATCTTGTTTTGGGGAGGGCATCTTTATTACATTGCTGCTTCTTGTGA
CTTGAATGATGGTGTCCGCTCCAAAATTCACTCCTAATGTGATTACTATT
ACATTATGTAGAGGGTGATCATGTCTGGAGCACAGAGTCCTTCAGGNAGT
CACACCTTATAAAAGATTTGAGGTTGAGAAGGTGGGGGCCCGNCTGTCTG
CTTGGCCCTTTAACTTGTGCCCTGTGAAAAACAATCTTGGCGCAAAAAAT
GGGCTTTTTTTTTTCTTCTCTTTATCCCCCCAAAAGGTTTTTTTTGTCGA
CAGGCCTCTTTTGAATCCTTTTCATAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_o24.g1 MSMg01no354_o24.g1 CHROMAT_FILE:
MSMg01no354_o24.g1 PHD_FILE: MSMg01no354_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:15 2005
         (481 letters)



>mm_chr10_79022006_79022886
          Length = 881

 Score =  919 bits (475), Expect = 0.0
 Identities = 481/485 (99%), Gaps = 4/485 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccaggggatacacaaagaaaccctgtcttagaaaaccaaaatcaaccagt-- 58
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 762 caggacagccaggggatacacaaagaaaccctgtcttagaaaaccaaaatcaaccagtca 703

                                                                       
Query: 59  --caaccaaccaaccaaccaaaactagccaaggcagctttctagacaggacatcctgcaa 116
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 accaaccaaccaaccaaccaaaactagccaaggcagctttctagacaggacatcctgcaa 643

                                                                       
Query: 117 aaggatggggagaaagctggtttcccaaatggagcttctggtagccaggctgcatctggt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 aaggatggggagaaagctggtttcccaaatggagcttctggtagccaggctgcatctggt 583

                                                                       
Query: 177 agtgactaggcactgatgccctaagatctattggtagacagcaggtagttgcgggatgtt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agtgactaggcactgatgccctaagatctattggtagacagcaggtagttgcgggatgtt 523

                                                                       
Query: 237 gtgctggtgactgggccctgtaccagtgagagaatgctatagatacaagggttgcttctg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtgctggtgactgggccctgtaccagtgagagaatgctatagatacaagggttgcttctg 463

                                                                       
Query: 297 ggttatagcacacggtatggctatcctgccatccattctcagagtagctttgacacagct 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ggttatagcacacggtatggctatcctgccatccattctcagagtagctttgacacagct 403

                                                                       
Query: 357 ccttatagtataaggtgccatcttgttttggggagggcatctttattacattgctgcttc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ccttatagtataaggtgccatcttgttttggggagggcatctttattacattgctgcttc 343

                                                                       
Query: 417 ttgtgacttgaatgatggtgtccgctccaaaattcactcctaatgtgattactattacat 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttgtgacttgaatgatggtgtccgctccaaaattcactcctaatgtgattactattacat 283

                
Query: 477 tatgt 481
           |||||
Sbjct: 282 tatgt 278


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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