BAC Information

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BAC

Clone NameMSMg01-355E02
Chromosome10 (Build37)
Map Location 14,426,448 - 14,427,007
singlet/doubletsinglet
Overlap genenone
Upstream geneAig1, EG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1
Downstream geneD230044M03Rik, EG666904, Nmbr, LOC666917, LOC637043, LOC100039492
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355E02.T7 (MSMg01no355_e02.b1)MSMg01-355E02.TJ (MSMg01no355_e02.g1)
ACCAG465686AG465687
length767765
length of high quality
(start - end)
579 (43 - 621)479 (76 - 554)
definitionCHROMAT_FILE: MSMg01no355_e02.b1 PHD_FILE: MSMg01no355_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:39 2005CHROMAT_FILE: MSMg01no355_e02.g1 PHD_FILE: MSMg01no355_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:48:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTCTGAATATATATTTTCCTAGACCCCAGAGATTCACCTACCTCTGC
CTCCAGAATGCTGGGATTAAAGGTATGCACCACCATGCCTGACACTATTG
AATTTTAGTGAATCTTTATGGAAGAACCTATAGCAATACGTCTCAAGCCA
TTCCATGTATAAAAAGGGAAGCAACACTACCAATTTCATTCAGTGATACT
AGTGTTACTCTGGTGGTAAACCACATAAGGCAAACACTATATACCAATAT
TGGCGTTGAAAAAACAGGAAAGTTCAGCCGGGCGGTGGTGGGGCACGCCT
TTAATCCCAGCACTTGAGAGGCAGAGGCAGGTAGATTTCTGAGTTTGAGG
CCAGCCTGGTCTACAAAGTGAGTTCCAAAACAGCCAGGGCTATACAGAGA
AACCCTATCTCAAAAAAACAAAACAAAAAACAAACAAACAAATAAAACCC
AAACAAAAAGAAAAAAAATACAGGAGAGTTCAAATGAAATGTAAGTCCTT
AAGGATGATACTATGCAATGGAGAGGTGGCAATAGATAAATAAATAAATA
AATATCACTGCTATAAAGAAAAGGTGGGGTGTGCTATAAAGTCAGAAGTG
CAGACTCTCCTGGACTCTATCTTGTCCAGTAGTAAGACAGACTAATACTT
TCCTAATGTTCATCATCTTCCTCCACTAATCACCTCGCATAGTTCACTAN
NACAAGCACTAGCCATA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAATGTTACCTATTCAGTAA
CATTCAAATTCACTTCTAGTAGAGACAGTGAAACTAATCAGGCATTACAA
AGAAGAGAGCTAGAAAAACTCAGGGCTAGTCTGCATAGTAATTACTTAGG
ACAATAGCAGAGTCACACCCAAACACAGGAATACACAATGGCCTAGGAAA
TAGGTGGGTTTAGTGCAGGTTTCTTCACTAGGCCCAGAGGAATAGCATAA
TCAGGTATTTACTAAAGAACCCCTGGTGGTGCATCAGAGCATTCACCTGG
CTCTGGTGTTTAGCTGATCCTTTTAATTAAGAGGTAAATGAGGCCTGGCT
CCCACCATCTTTTTATGTATGGATTCTTTTTCTTTTGTGTCAGTGTAACT
TGGTGGATGTGTTCGCCTGGATTTGTTGTTTTTCTTCTGTATTAAAAGTC
TGGTGTTTGTGCCGGGCGNGGTGGCACACGCCTTTAATCCCAGCACTCGG
GAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCCGGTCTTACAA
GGGAGCTCTTGGATTGCCAGGGTTATTCCGAGATATCCTGTTTCGATAAA
ACTTCCCTTTCCCTCCATACTTTTCTAACTCTAACTCTGGTGTTTGGTTG
ATAATTACACCCCTCTAATCCTATTCCCCTGAGGCGTGGTCTGTCTGACC
CTATTTTCTTTCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_e02.b1 MSMg01no355_e02.b1 CHROMAT_FILE:
MSMg01no355_e02.b1 PHD_FILE: MSMg01no355_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:39 2005
         (579 letters)



>mm_chr10_14426426_14427404
          Length = 979

 Score = 1044 bits (540), Expect = 0.0
 Identities = 555/560 (99%), Gaps = 1/560 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctctgaata-tatattttcctagaccccagagattcacctacctctgcctcc 62
           ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 582 ggaattccctctgaagactatattttcctagaccccagagattcacctacctctgccttc 523

                                                                       
Query: 63  agaatgctgggattaaaggtatgcaccaccatgcctgacactattgaattttagtgaatc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 agaatgctgggattaaaggtatgcaccaccatgcctgacactattgaattttagtgaatc 463

                                                                       
Query: 123 tttatggaagaacctatagcaatacgtctcaagccattccatgtataaaaagggaagcaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tttatggaagaacctatagcaatacgtctcaagccattccatgtataaaaagggaagcaa 403

                                                                       
Query: 183 cactaccaatttcattcagtgatactagtgttactctggtggtaaaccacataaggcaaa 242
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cactaccattttcattcagtgatactagtgttactctggtggtaaaccacataaggcaaa 343

                                                                       
Query: 243 cactatataccaatattggcgttgaaaaaacaggaaagttcagccgggcggtggtggggc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cactatataccaatattggcgttgaaaaaacaggaaagttcagccgggcggtggtggggc 283

                                                                       
Query: 303 acgcctttaatcccagcacttgagaggcagaggcaggtagatttctgagtttgaggccag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acgcctttaatcccagcacttgagaggcagaggcaggtagatttctgagtttgaggccag 223

                                                                       
Query: 363 cctggtctacaaagtgagttccaaaacagccagggctatacagagaaaccctatctcaaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cctggtctacaaagtgagttccaaaacagccagggctatacagagaaaccctatctcaaa 163

                                                                       
Query: 423 aaaacaaaacaaaaaacaaacaaacaaataaaacccaaacaaaaagaaaaaaaatacagg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 aaaacaaaacaaaaaacaaacaaacaaataaaacccaaacaaaaagaaaaaaaatacagg 103

                                                                       
Query: 483 agagttcaaatgaaatgtaagtccttaaggatgatactatgcaatggagaggtggcaata 542
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aaagttcaaatgaaatgtaagtccttaaggatgatactatgcaatggagaggtggcaata 43

                               
Query: 543 gataaataaataaataaata 562
           ||||||||||||||||||||
Sbjct: 42  gataaataaataaataaata 23


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)