BAC Information

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BAC

Clone NameMSMg01-355K15
Chromosome10 (Build37)
Map Location 81,867,726 - 81,868,169
singlet/doubletsinglet
Overlap genenone
Upstream geneNfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412
Downstream geneLOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355K15.T7 (MSMg01no355_k15.b1)MSMg01-355K15.TJ (MSMg01no355_k15.g1)
ACCAG465998AG465999
length881764
length of high quality
(start - end)
---472 (77 - 548)
definitionCHROMAT_FILE: MSMg01no355_k15.b1 PHD_FILE: MSMg01no355_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:10 2005CHROMAT_FILE: MSMg01no355_k15.g1 PHD_FILE: MSMg01no355_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
NGGAATTCCTAAACTCTGATATAAAATATCTTGGGGTGTGACTCTAACCA
AACAAGTGGAAAGAATCTGTNNGTGATAAGAACTNTCAAGNTCTCTGAAA
GAAAAGAANATCGAGGAAAGAATCTTCCATGGCTCATGGAATTGGACANN
GGATTAATTATAGAAAATGGGCCATCNTTGCTAAAAACAATCTATAGATT
CAGTGCAATCGCTATCATAATCAAAATTTCTAAATCTCTTTTTTTTTTTA
GAGAGAAGAGACGCCGCAATTCTCAAATTATTTTGGAATAAACATAAGCC
GCATATGAGATATTTTCTCCAATTTTTATCTCCGAAAAAAAAAAAAAAAA
AAATTCTGGGGGGAAAAACCAAAAATCCTTGGATTCTCCTTGTTCCCCCA
CCCAAAAAAGAAAGGAAAATGTGGGGTGGTAAATACGGTTGGAAAAAAAC
GGAACCGGAAAATNCCTTTTTCTCGGATAAATCTTTTTTGGGCACAACTC
TTTAGAAGGAATTTCTTTCTCCCATTGGGTTTTCCTTCCTTTTTTTTTTT
ATTAAAAAAAAAATCTCTGAGAAAAATAACTCTCTCCTTTTCTCTTTTTT
TGTTGAAATAAACCCTTTCTCTTTTTCTATTCCCTCCCCCCCCCCGTTTT
TTTTTTCATCTCATTTTGGGGTGGTGCTTTCTCTTCTGTGGGAGTGATAT
TACCCACGTTTTTTAAAAAAATATTTATCTCTTTTTGCACCCCTCTATCC
TACTTCCCCTCCTTTGTTCAATATAATCGACCCCCCCCTTTCTTTCTTTT
TTTGTTTCCACGATTATCTCACTCTTTATTC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACATGAGAAGAATTCTGAGT
GCTTGTGAGAACACTCCAAAAAAAACAAGACAGAATTCTTTTGACCTCAG
TTTCTTTGAAGCAAATATCATTCTTGAACTGTATTTCTGTGCTCCTCCCA
GGTGCTGCACATAGGAGTTATGTTCACTGCTTATTACTCATTATTATTTG
ATGTTGTTATTCAGTTAAGTATCCTTCATATGTTTCTATGCAAAAAAAAA
AAAAACAAAAAACAAACCACATGTTTCTGTACCATGAGGCCCATTTTTTT
CACTGTATATACCTAATTAGAACTGTAGTATTGTCTTCATGGCTTGACAA
TCTCATAACCCTGCTTTCTTCCTTTTCTTTAGGTATAGTCTCTGAAGATA
TTTTGGAAGCTCTTCATGGATCTATCATAGGTGAATTCAGACTATCAGGT
GTCCACAAAGGGTTTTTTTAGTGTCCTAAAGAAAAACAGAAGTGTAGCCT
TAGTTCCAGTGACTTTCTGAAACTGGGTCCTTCCTTTGACTTGGCATTAC
ATCTTTTTCAATGAACATGACCTTGATTTTTTTCAGAAAACTCCTCAAAG
ATTCCTTAGTTCTGAAGGCATTTGGGCCCCAATTAAAAAAAAATCTCAGA
ATTATTATATGGATAAAAATTGGGTGAAAAAAAAATTTTCTCCCTCCCCC
CCTTTATTTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_k15.g1 MSMg01no355_k15.g1 CHROMAT_FILE:
MSMg01no355_k15.g1 PHD_FILE: MSMg01no355_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:10 2005
         (472 letters)



>mm_chr10_81867297_81868169
          Length = 873

 Score =  756 bits (391), Expect = 0.0
 Identities = 435/459 (94%), Gaps = 16/459 (3%)
 Strand = Plus / Minus

                                                                       
Query: 15  aattctgagtgcttgtgagaacactccaaaaaaaacaagacagaattcttttgacctcag 74
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 873 aattctgagtgcttgtgagaacactccaaaaaaaacaagacaaaattcttttgacctcag 814

                                                                       
Query: 75  tttctttgaagcaaatatcattcttgaactgtatttctgtgctcctcccaggtgctgcac 134
           |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 813 tttctttgaagctaatatcattcttggactgtatttctgtgctcctcccaggtgttgcac 754

                                                                       
Query: 135 ataggagttatgttcactgcttattactcattattatttgatgttgttattcagttaagt 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ataggagttatgttcactgcttattactcattattatttgatgttgttattcagttaagt 694

                                                                       
Query: 195 atccttcatatgtttctatgcaaaaaaaaaaaaaacaaaaaacaaaccacatgtttctgt 254
           ||||||||||||||||||||||||||||                ||||||||||||||||
Sbjct: 693 atccttcatatgtttctatgcaaaaaaa---------------taaccacatgtttctgt 649

                                                                       
Query: 255 accatgaggccca-tttttttcactgtatatacctaattagaactgtagtattgtcttca 313
           ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 648 accatgaggcccattttttttcactgtatatacctaattagaactgtaatattgtcttca 589

                                                                       
Query: 314 tggcttgacaatctcataaccctgctttcttccttttctttaggtatagtctctgaagat 373
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 588 tggcttgacaatctcataactctgatttcttccttttctttaggtatagtctctgaagat 529

                                                                       
Query: 374 attttggaagctcttcatggatctatcataggtgaattcagactatcaggtgtccacaaa 433
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 attttggaagctcttcatggatctatcataggtgaattcagactatcaggtgtccacaaa 469

                                                  
Query: 434 gggtttttttagtgtcctaaagaaaaacagaagtgtagc 472
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gggtttttttagtgtcctaaagaaaaacagaagtgtagc 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 873
Length adjustment: 10
Effective length of query: 462
Effective length of database: 863
Effective search space:   398706
Effective search space used:   398706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)