BAC Information

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BAC

Clone NameMSMg01-355K24
Chromosome10 (Build37)
Map Location 29,232,556 - 29,420,100
singlet/doubletdoublet
Overlap geneRspo3, EG630389, Rpl12
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
Downstream geneLOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-355K24.T7 (MSMg01no355_k24.b1)MSMg01-355K24.TJ (MSMg01no355_k24.g1)
ACCAG466016AG466017
length746774
length of high quality
(start - end)		573 (51 - 623)432 (80 - 511)
definitionCHROMAT_FILE: MSMg01no355_k24.b1 PHD_FILE: MSMg01no355_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:12 2005CHROMAT_FILE: MSMg01no355_k24.g1 PHD_FILE: MSMg01no355_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,232,556 - 29,233,124)(29,419,955 - 29,420,100)
sequence
NNNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACAAATTTGGTAAATATCACTTTAGCCAAAAAAATAAAGA
AACAAGCAAACAAAAACATAGCCCTAACCCTGGCAGGGGCCTTAGAGAAA
GGAGAAGGAGAAAAGACTTCATATTCACTTCAGATTTCTCTCCCTTTTTG
CACTTGTTCACACTTAATGTTCCTCAACTTAAGGAGTTTATTTGGTCTGA
TAATTTCTTGGTAGTCTCTTTGATAATTTCTGGCATCTATAGAGAGTGAC
CATTTATTGCATTGATTTTTAATAATGAGTATGATTGAAGAATGAATGAC
ACCCATAATATAAAAAGGCTGTGTAATTGTGTTTTTTAATGCAAGTGTTA
AACTGATATTTAACAGAAAGCTAAACAAAAAAGGTTTTTCTAGATGTCTT
TTAGTAGTCTCTTTATCTAGAAGTTTTTTGTTTAATCTTGACTAAGTTAG
GAAATGTATTTCTACACAATCAAGTCCCCAAAAGACTGTGGCAGCAGGTC
TCCTTGTGTTATTATACAGTGACATTATGGTAACTGAAAATTTAGGGATG
ATTGATTCACGGTTCCTTGAAGATCAAGTGTTAAAAAATAGAATTACTGG
ATAGTCTCTTACACATTTTTTGGTGAACACAAAAGAAAATATTGAGAATT
TTTAAATTCTCATTCATTAGTCAAAGCTTAAATCTGAACATGGNTG

NNNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCCAGTTTGGCCTGATTAT
CTCCTGAGGAAGTTTGTTTTATCTCTAGACCTCTACACTTTAACCATCAT
TTGTTTTTCACCTCTGAGAGTAAAATTTAAAAATCTTGCCAGGCAGTGGT
GGACACGCCTTTAGTCTCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCT
GAGTCCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC
TACACAGAGTAACCCTGTCTCAGAAAACAAAACAAAACAAAACAAAACAA
AACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAGCAA
AGCAAAGCAAAGCAAAACAACACTTTAGCGGAGTCTTTGGAACCCTCCAC
AGTGTTGAGTCATTGCTTTATGTATATTAAGCCATCTATCTATATTTGGA
GTTCATGAGATTTCTACNATCTTAGCTTTAAAGTACAGAAAATTGTGTCT
CATCTAGCATTATATTTAGGGAAATGATTATATTTCCTCTTTAATAAACG
ATTATAGTTTGATAACCCTTTTTCCTACTAAAACAAAGGTTCCTGCTAGA
AGGTTCCCCTCAAACCCTATGAACTGCCTTCTTGTAACAGACTCCCCATG
GGGTATTGCCAAGAAAAAAAAAGTGGTTGCCAAAAAAAAAATTTTTATTG
CTTGGGTCCCCCCCAATTGTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no355_k24.b1 MSMg01no355_k24.b1 CHROMAT_FILE:
MSMg01no355_k24.b1 PHD_FILE: MSMg01no355_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:12 2005
         (573 letters)



>mm_chr10_29232352_29233324
          Length = 973

 Score = 1062 bits (549), Expect = 0.0
 Identities = 564/569 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaaatttggtaaatatcactttagccaaaaaaataaagaaacaagcaaacaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaaatttggtaaatatcactttagccaaaaaaataaagaaacaagcaaacaaa 264

                                                                       
Query: 65  aacatagccctaaccctggcaggggccttagagaaaggagaaggagaaaagacttcatat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aacatagccctaaccctggcaggggccttagagaaaggagaaggagaaaagacttcatat 324

                                                                       
Query: 125 tcacttcagatttctctccctttttgcacttgttcacacttaatgttcctcaacttaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 325 tcacttcagatttctctccctttttgcacttgttcacacttaatgttcctcaatttaagg 384

                                                                       
Query: 185 agtttatttggtctgataatttcttggtagtctctttgataatttctggcatctatagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 agtttatttggtctgataatttcttggtagtctctttgataatttctggcatctatacag 444

                                                                       
Query: 245 agtgaccatttattgcattgatttttaataatgagtatgattgaagaatgaatgacaccc 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 agtgaccatttattgcattgatttttaataatcagtatgattgaagaatgaatgacaccc 504

                                                                       
Query: 305 ataatataaaaaggctgtgtaattgtgttttttaatgcaagtgttaaactgatatttaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataatataaaaaggctgtgtaattgtgttttttaatgcaagtgttaaactgatatttaac 564

                                                                       
Query: 365 agaaagctaaacaaaaaaggtttttctagatgtcttttagtagtctctttatctagaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaaagctaaacaaaaaaggtttttctagatgtcttttagtagtctctttatctagaagt 624

                                                                       
Query: 425 tttttgtttaatcttgactaagttaggaaatgtatttctacacaatcaagtccccaaaag 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttttgtttaatcttgactaagtaaggaaatgtatttctacacaatcaagtccccaaaag 684

                                                                       
Query: 485 actgtggcagcaggtctccttgtgttattatacagtgacattatggtaactgaaaattta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actgtggcagcaggtctccttgtgttattatacagtgacattatggtaactgaaaattta 744

                                        
Query: 545 gggatgattgattcacggttccttgaaga 573
           |||||||||||||||| ||||||||||||
Sbjct: 745 gggatgattgattcacagttccttgaaga 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no355_k24.g1 MSMg01no355_k24.g1 CHROMAT_FILE:
MSMg01no355_k24.g1 PHD_FILE: MSMg01no355_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:12 2005
         (432 letters)



>mm_chr10_29419793_29420624
          Length = 832

 Score =  275 bits (142), Expect = 5e-78
 Identities = 145/146 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catccagtttggcctgattatctcctgaggaagtttgttttatctctagacctctacact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 308 catccagtttggcctgattatctcctgaggaagtttgttttatctctagacctctatact 249

                                                                       
Query: 61  ttaaccatcatttgtttttcacctctgagagtaaaatttaaaaatcttgccaggcagtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttaaccatcatttgtttttcacctctgagagtaaaatttaaaaatcttgccaggcagtgg 189

                                     
Query: 121 tggacacgcctttagtctcagcactt 146
           ||||||||||||||||||||||||||
Sbjct: 188 tggacacgcctttagtctcagcactt 163


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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