BAC Information

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BAC

Clone NameMSMg01-356A17
Chromosome10 (Build37)
Map Location 101,726,421 - 101,726,960
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356A17.T7 (MSMg01no356_a17.b1)MSMg01-356A17.TJ (MSMg01no356_a17.g1)
ACCAG466284AG466285
length744773
length of high quality
(start - end)
543 (42 - 584)447 (72 - 518)
definitionCHROMAT_FILE: MSMg01no356_a17.b1 PHD_FILE: MSMg01no356_a17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:39 2005CHROMAT_FILE: MSMg01no356_a17.g1 PHD_FILE: MSMg01no356_a17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATGGGCTTCCTTTTGCTAAGTAGACTGTAATCTTTCTTATGTCATATA
AATAGATTATAAAATTCACTTAAGTTCAGAAGTTTCTTCCCACAAAACTC
ATATTCTAACTCTCTCATAAGATCTTTTAAATTTTTAAATTAAAGAAAGC
ATTTTTTAAAATGCCTTCTTGGAGCTAAGACACATATGAAAAGTTGGTAG
TATTTAATTCCATTTTTTCAATCTACAGTTCCAAAGTGTTGTGTCATATT
AGGTAACACTTTGTATAGACTACCAGAAATGGCAACATTTATAGTTCTCA
TCATAGTCATAGGCTCTTTAGTCCTCCAGCTTGTAATTTTTCTTAGTTTA
AATACAAGGTGAGTCCCATCTTGGAATGGGAGACCCCAGCATGCTGGACT
TCTGCAGAATAAAACCCTCTTTGCTTGTACATACTACTTGAGTCCAGGAT
ATTATTCTTTGGGAATCATGGACCCTTACATTTGGGGGTTCTTGTCCAAG
ACGCCCAGACCAAATAATGGAATATTTTTCTGATGGGTTAGTCTGATTGT
CTTTTGTCCATCTCTGTGTTTCTGTTTCAGGTTTAAACTGTGTTTCTGTT
TANGAGGAACNAAGCAGATGCCTATTTTATCACCCAGCCAGGGGGCATGA
CAACCCTCTGGAGCCGGAACAAAAACTGGGAACTTTGCTAGTTC
GATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCTCATTTTTTAG
TAAGGTTATTTGGTTCTCAGGAGTCTAACTTCTTGAGTTCTTTGTATATA
TTGGATATTAGCCTTCTAGCAGATGTAGGGTGGTTAAAGATCTTTCCCCA
ATTTGTTGGTTGCCATTTAGTCCTATTGACAGTGTCCTTTGCTTTAGAGT
ATCTTTTAAATTTTATGAGGTCCCATTTGTCAATTCTTGATCTTAGAGCA
TAAACTATTGGTGTTCTATTCAGGAAAATTTCCCCTGTGCCCATGTGCTC
GAGGCTCTTCCCCACTTTTTTTTTCTATTAGTTTCAGTGTATCTGGTTTT
ATGTGGAGGACCTTGATCCATTTGGACTTTAACTTTGTACAAGGAGGTAG
GAATGGATTGATTCTCATTCTCCTACATTCTAACTGCTAGTTGAACCAGC
ACCATTTGTTGAAAATGCAGTCTTTTTTCCCCCTACTGGATGGTTTTAGC
TCCTTTTATTTTCTCCTAATTCTCAAAAATTCTCAAAATAACTTCATGCT
TATCTTTAAAAAATGAGCTAAACACTGAGCGCTTCCTCCCGTTCCTTCCC
CCCCAACTGTTAGTCCAAATTAACCCCCCTAAGTGGAAATGTTTGATTGA
AAAAAAAAATTCCCAATAAAATTCAACCCGCCCATTTTTTTAATAAAAAT
TTGGGGTAATGGCTTCCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_a17.b1 MSMg01no356_a17.b1 CHROMAT_FILE:
MSMg01no356_a17.b1 PHD_FILE: MSMg01no356_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:39 2005
         (543 letters)



>mm_chr10_101726387_101727329
          Length = 943

 Score =  951 bits (492), Expect = 0.0
 Identities = 528/540 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatgggcttccttttgctaagtagactgtaatctttcttatgtcatataaata 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ggaattcaatgggcaaccttttgctaagtagactgtaatctttcttatgtcatataaata 515

                                                                       
Query: 64  gattataaaattcacttaagttcagaagtttcttcccacaaaactcatattctaactctc 123
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 514 gattataaaattcacttaagttcagaagtttcttcccacaaaactcatatcctaactctc 455

                                                                       
Query: 124 tcataagatcttttaaatttttaaattaaagaaagcattttttaaaatgccttcttggag 183
           |||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||
Sbjct: 454 tcataagatcttttaaatttttaaatcaaagaaagcattttaaaaaatgccttcttggag 395

                                                                       
Query: 184 ctaagacacatatgaaaagttggtagtatttaattccattttttcaatctacagttccaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctaagacacatatgaaaagttggtagtatttaattccattttttcaatctacagttccaa 335

                                                                       
Query: 244 agtgttgtgtcatattaggtaacactttgtatagactaccagaaatggcaacatttatag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 agtgttgtgtcatattaggtaacactttgtatagactaccagaaatggcaacatttatag 275

                                                                       
Query: 304 ttctcatcatagtcataggctctttagtcctccagcttgtaatttttcttagtttaaata 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttctcatcatagtcataggctctttagtcctccagcttgtaatttttcttagtttaaata 215

                                                                       
Query: 364 caaggtgagtcccatcttggaatgggagaccccagcatgctggacttctgcagaataaaa 423
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 214 caaggtgagtcccatcttggaatgggagaacccagcatgctggacttctgcagaataaaa 155

                                                                       
Query: 424 ccctctttgcttgtacatactacttgagtccaggatattattctttgggaatcatggacc 483
           |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 154 ccctctttgcttttacatactgctcgagtccaggatattattctttgggaatcatggacc 95

                                                                       
Query: 484 cttacatttgggggttcttgtccaagacgcccagaccaaataatggaatatttttctgat 543
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 94  cttacatttggggattcttgtccaggacgcccagaccaaataatggaatatttttctgat 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)