BAC Information

Click to search

BAC

Clone NameMSMg01-356C01
Chromosome10 (Build37)
Map Location 53,792,613 - 53,989,763
singlet/doubletdoublet
Overlap geneMan1a
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
Downstream geneLOC100041898, LOC382460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356C01.T7 (MSMg01no356_c01.b1)MSMg01-356C01.TJ (MSMg01no356_c01.g1)
ACCAG466348AG466349
length731751
length of high quality
(start - end)		617 (44 - 660)357 (71 - 427)
definitionCHROMAT_FILE: MSMg01no356_c01.b1 PHD_FILE: MSMg01no356_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:46 2005CHROMAT_FILE: MSMg01no356_c01.g1 PHD_FILE: MSMg01no356_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:46 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,989,152 - 53,989,763)(53,792,613 - 53,792,967)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCTTTATTCTCCACACATTTGGCACACAATTGGACCCAAGGAAGGC
ATTTGAAAATCCTCATTTAACTGAACTGATTGAAAGGTTAGTTTCCCAAA
TGAGGTTGGTAACTTTCTATTTATTGTATGGTAGAATCCAGCCCAGCATC
TTGATGGATAAAAGAAAAACGTGTAAAACACAAGGGAAAACGCTTCACCT
ACCCTAACCTCGAAACCTTGATTGATTTTCTAGTCTTTGTTGAATTTTCC
CCCCAATATTATTAAAGACTTTTTCACAACATGGATTTCTTCCAGGCAAA
GCTTAAAACACATTATTTCAGCCCAGTTGAAGTCTTGCACACGTATCCAC
AAAGGACATATTACTTTTGCCTAAAGCAGATCCTTTGTTTGTTGAGCTTT
CCCTTAACACAGCACACAGCACTTTGCATAGCTGTCTGGACACCCTGGGC
ACTTAATAAGCACTTACTGTTTTAAGTAGTTTACTGTCCTGAGAGAGCCT
TTGAAACAGATCAAGACTACAAGTGGAATGGATTCTTANAGGCTGTGGTT
TTTGTTTTTTTCTAAATAAAGCACCAAAAGGAAAGGACAGCAGCCACTGT
TCCTCCTCANCAACTGTGTCATACCATCACGTTGAGAGGAGAGCTTGCTC
TTGAGTATGGTTGCCTGCAGAGATTACCCAC

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAGCATGCCATTCATGGATTACTGTCCTC
AAACAGCAGCAGCAGATGCTGATCATTTGAGGGTAAATCTTCTAATGGTC
CGTATTGACTAAGGAGTCTAAGAGGTAGGGGTGGAAAGATGTTTCCGAAG
AAGCAGAAATGTGTCCCATTCTCTCAGAAGGGTAGGACTGTTGGCATTTC
ACAGAGGAAAAGCTGTCAGAGAAAGCAGCCCAGGATAGCAGAAGCCGTCC
CTCTACTGTGTCTCTGCAAAGCAGAAAGCATGCTGGATGATCAAACAGAG
CCATGAGCCTGGAGGGTTAAAGGCTCATCTCAGAGGAGACTGAGAGGAAC
CCATGTCCACTTGAACTTGCTCAGTTGNNNNNNNNNNNNNNNNNNNNNNT
TTTCTCCCCTCTCTTCCTTCTCTTTCTCCTCTCCCCCCTTTTTCTTTTTC
TTCCCCTCCCTTTTCTCTTCTTTCCTCCCTTCCTTTCCCCTTTCTTTTCC
CTTTTTCCCTTTTTTTTTTTTTCCTCTTCTTTTTTTTTCTCTTCCCTTTC
TTTTTCCCCCTTTCTTTTCTTCCACCCTTTTTTTCTCACTTCTTCCACTT
CCTCCATTCTCCTCCTTTTTCCTTTTTCTTTTTTCCCTCTCTACCCCTTT
TTCCCCACTTTCATTTATCATTTTTACTCCTTCCCTCTTTTTTCCCTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_c01.b1 MSMg01no356_c01.b1 CHROMAT_FILE:
MSMg01no356_c01.b1 PHD_FILE: MSMg01no356_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:46 2005
         (617 letters)



>mm_chr10_53988948_53989964
          Length = 1017

 Score = 1139 bits (589), Expect = 0.0
 Identities = 606/612 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctttattctccacacatttggcacacaattggacccaaggaaggcatttgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 gaattctcctttattctccacacatttggcacacaattggacccaaggaaggcatttgaa 757

                                                                       
Query: 65  aatcctcatttaactgaactgattgaaaggttagtttcccaaatgaggttggtaactttc 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 756 aatcctcatttaactgaactgattgaaaggctagtttcccaaatgaggttggtaactttc 697

                                                                       
Query: 125 tatttattgtatggtagaatccagcccagcatcttgatggataaaagaaaaacgtgtaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tatttattgtatggtagaatccagcccagcatcttgatggataaaagaaaaacgtgtaaa 637

                                                                       
Query: 185 acacaagggaaaacgcttcacctaccctaacctcgaaaccttgattgattttctagtctt 244
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 636 acacaagggaaaacgcttcacctaccctaacctcaaaaccttgattgattttctagtctt 577

                                                                       
Query: 245 tgttgaattttccccccaatattattaaagactttttcacaacatggatttcttccaggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 tgttgaattttccccccaatattattaaagactttttcacaacatggatttcttccaggc 517

                                                                       
Query: 305 aaagcttaaaacacattatttcagcccagttgaagtcttgcacacgtatccacaaaggac 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 516 aaagcttaaaacacattatttcagcccagttgaagtcttgcacacatatccacaaaggac 457

                                                                       
Query: 365 atattacttttgcctaaagcagatcctttgtttgttgagctttcccttaacacagcacac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atattacttttgcctaaagcagatcctttgtttgttgagctttcccttaacacagcacac 397

                                                                       
Query: 425 agcactttgcatagctgtctggacaccctgggcacttaataagcacttactgttttaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agcactttgcatagctgtctggacaccctgggcacttaataagcacttactgttttaagt 337

                                                                       
Query: 485 agtttactgtcctgagagagcctttgaaacagatcaagactacaagtggaatggattctt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agtttactgtcctgagagagcctttgaaacagatcaagactacaagtggaatggattctt 277

                                                                       
Query: 545 anaggctgtggtttttgtttttttctaaataaagcaccaaaaggaaaggacagcagccac 604
           | ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 aaaggctgtagtttttgtttttttctaaataaagcatcaaaaggaaaggacagcagccac 217

                       
Query: 605 tgttcctcctca 616
           ||||||||||||
Sbjct: 216 tgttcctcctca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_c01.g1 MSMg01no356_c01.g1 CHROMAT_FILE:
MSMg01no356_c01.g1 PHD_FILE: MSMg01no356_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:46 2005
         (357 letters)



>mm_chr10_53792413_53793169
          Length = 757

 Score =  671 bits (347), Expect = 0.0
 Identities = 353/355 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcatgccattcatggattactgtcctcaaacagcagcagcagatgctgatcatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcatgccattcatggattactgtcctcaaacagcagcagcagatgctgatcatttga 260

                                                                       
Query: 61  gggtaaatcttctaatggtccgtattgactaaggagtctaagaggtaggggtggaaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggtaaatcttctaatggtccgtattgactaaggagtctaagaggtaggggtggaaagat 320

                                                                       
Query: 121 gtttccgaagaagcagaaatgtgtcccattctctcagaagggtaggactgttggcatttc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttcggaagaagcagaaatgtgtcccattctctcagaagggtaggactgttggcatttc 380

                                                                       
Query: 181 acagaggaaaagctgtcagagaaagcagcccaggatagcagaagccgtccctctactgtg 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 acagaggaaaagctgtcagagaaagcaacccaggatagcagaagccgtccctctactgtg 440

                                                                       
Query: 241 tctctgcaaagcagaaagcatgctggatgatcaaacagagccatgagcctggagggttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctgcaaagcagaaagcatgctggatgatcaaacagagccatgagcctggagggttaa 500

                                                                  
Query: 301 aggctcatctcagaggagactgagaggaacccatgtccacttgaacttgctcagt 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggctcatctcagaggagactgagaggaacccatgtccacttgaacttgctcagt 555


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |