BAC Information

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BAC

Clone NameMSMg01-356D03
Chromosome10 (Build37)
Map Location 127,136,010 - 127,136,542
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440
Downstream geneMyo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356D03.T7 (MSMg01no356_d03.b1)MSMg01-356D03.TJ (MSMg01no356_d03.g1)
ACCAG466398AG466399
length746762
length of high quality
(start - end)		533 (43 - 575)470 (73 - 542)
definitionCHROMAT_FILE: MSMg01no356_d03.b1 PHD_FILE: MSMg01no356_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:51 2005CHROMAT_FILE: MSMg01no356_d03.g1 PHD_FILE: MSMg01no356_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGTAAGTTACTTTGCTCTTCTGTGGGTTGACTCACTGTGAAAGACA
GATTTCTTTTCAAGGCCATTTTTTTTAAAACTGTATTTGAATTTGGGGCG
AGCAAAGCAAGCTCATTTTCTTACCCCTGTCTGGTAGTTGGAGAAGTGAA
TGCTGAGAGAGCTGCTTCAGACAGTGAAGGACAGACGGTGCCTCTTTTGT
ATGCTGTGTATCCTTGGCCTGCCTGCCTGCCTGCCTGGGTGGCTCCGCTG
GATGCTTCTGAGCCTCTGCGTGCCCAGACACTGCTTGAGTCAGCTCAGTC
TCATCCCTCAGAATGAGCTCATCAAGGACCGAGGGAGAAGTGGAGTGAGC
TGGACACTGGAGCCATGAGCGCTGTGTGCCAGCAATCATCGATCCAGAAG
CTGGTTCCAGGAGTGGGGGTCTTGATGGTATTGGAAATGCATTGCTTCTA
ATGGGTCTGACCTGAGTTCATAAAACATGACTCCCGTTAATGGGAACATA
AGAGGCAGCCGGCATACAACTTTACAGTTTTCCTTTCCTTATGAGAACAT
ACCGATCCAAGCCAGGAAAAGTTTAGTCACTTTGATAACTTGCTTACCCT
GAAATGAGAAAGAGTCAGTTCCCCAACCANATTCTTGTTTTCTCACCATA
CGGTGCTTTTGTCTGAAATGCCTCTTTTGGTCTCCCCTGTCTCCTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTTACAGCCCCAAGAGCATGAGAGAAT
CACAAGGAAGAGAGAAGCATGTTCTGAAAGACAAGAATTCCTTTCTGACC
CCAAACTCAAACTGCCCACCATCCCAAGGAAATGGGAAATGGGTTTTTTG
AGGAAAAGGGTGAGGCATTAGAACTCCTAATATTAGCAGGGGATTGAGGG
TTCAGGATTGTATGTAGCTTCGGCCCTCAGAGGTCACTTACAGGATGCCA
GGTATTTCTCTCCATAGATCTCCCTGATTTCTGAGCTGGTCTGGTCCCAC
AGCATCTGGATATTTGAGCATAATCTGGCACTACTGGCCATACCAGTCAG
GAAGAAGCCAGGCTCTATAATAGCCACCTTCACCCCAAAGTAGCAGAGCT
CCTTCCTGCAAGACAAACAGATGTCAAGGACTTCAGAGATCTTTCAGTGA
GAACACTTTAATAAGAGTACAGTAGCAGGCCAACAGGAGCCTGTGATGAG
GATAGGCCCCTCACTTTTGGATTGGGACGTGCATGATATATGGAAGTATC
TTGCCATAATTGTACCTCCTTTGCCCTAAACATATTACCTCCTGGGTCTA
AGCGTTGCGGCGTAACTTCTTTTCTTCCTTTACATATATATGCTACAAAT
TTCTAGCCCTTTCTCCCCAGGTCCTCTCTTATCCCCAACATTTGTATATC
ATTTCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_d03.b1 MSMg01no356_d03.b1 CHROMAT_FILE:
MSMg01no356_d03.b1 PHD_FILE: MSMg01no356_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:51 2005
         (533 letters)



>mm_chr10_127135810_127136742
          Length = 933

 Score =  996 bits (515), Expect = 0.0
 Identities = 527/533 (98%), Gaps = 4/533 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgtaagttactttgctcttctgtgggttgactcactgtgaaagacagatttc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcactgtaagtgactttgctcttctgtgggttgactcactgtgaaagacagatttc 260

                                                                       
Query: 65  ttttcaaggccattttttttaaaactgtatttgaatttggggcgagcaaagcaagctcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttcaaggccattttttttaaaactgtatttgaatttggggcgagcaaagcaagctcat 320

                                                                       
Query: 125 tttcttacccctgtctggtagttggagaagtgaatgctgagagagctgcttcagacagtg 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttacccctgcctggtagttggagaagtgaatgctgagagagctgcttcagacagtg 380

                                                                       
Query: 185 aaggacagacggtgcctcttttgtatgctgtgtatccttggcctgcctgcctgcctgcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggacagacggtgcctcttttgtatgctgtgtatccttggcctgcctgcctgcctgcct 440

                                                                       
Query: 245 g----ggtggctccgctggatgcttctgagcctctgcgtgcccagacactgcttgagtca 300
           |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcctgggtggctccgctggatgcttctgagcctctgcgtgcccagacactgcttgagtca 500

                                                                       
Query: 301 gctcagtctcatccctcagaatgagctcatcaaggaccgagggagaagtggagtgagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcagtctcatccctcagaatgagctcatcaaggaccgagggagaagtggagtgagctg 560

                                                                       
Query: 361 gacactggagccatgagcgctgtgtgccagcaatcatcgatccagaagctggttccagga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacactggagccatgagcgctgtgtgccagcaatcatcgatccagaagctggttccagga 620

                                                                       
Query: 421 gtgggggtcttgatggtattggaaatgcattgcttctaatgggtctgacctgagttcata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgggggtcttgatggtattggaaatgcattgcttctaatgggtctgacctgagttcata 680

                                                                
Query: 481 aaacatgactcccgttaatgggaacataagaggcagccggcatacaactttac 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaacatgactcccgttaatgggaacataagaggcagccggcatacaactttac 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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