BAC Information

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BAC

Clone NameMSMg01-356E16
Chromosome10 (Build37)
Map Location 102,860,386 - 102,860,926
singlet/doubletsinglet
Overlap geneSlc6a15
Upstream geneLOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik
Downstream geneEG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356E16.T7 (MSMg01no356_e16.b1)MSMg01-356E16.TJ (MSMg01no356_e16.g1)
ACCAG466469AG466470
length769775
length of high quality
(start - end)
545 (36 - 580)450 (67 - 516)
definitionCHROMAT_FILE: MSMg01no356_e16.b1 PHD_FILE: MSMg01no356_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:58 2005CHROMAT_FILE: MSMg01no356_e16.g1 PHD_FILE: MSMg01no356_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:49:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGCGT
GCGTCTCGCCCAGAGGGTGCTAAATGCTCCCCTGTGCATGAGGAGTGGGA
GGAAGAAAAAGCAAGAATTGTGACCTGGTTGCTGATGGACATTGAAGTGT
CTGCAGAAACTGGTCAAACCACAGGCTGCTATATAACGAATACTGTAAAG
ATCTGAAGATTCTAAACAATTCAGTAAATGGGATCTTCGGACTTCTAAAA
GACTTCGTGCAAAAGAGCTGTGGATGTTGGCTCTCTGGGATGCAGAGGGG
AGATGACCAGAAGAATCTGGAGGAGAGATGAGCAGGAAATAAACTGAGAA
TCAGGAAAGTCTTTCAAGTCAGTCAGGAAGCAGCAAATTGAGTTTGATTT
AAAAATGTGCAGAGAATATTTCATGTTTTTTGTAGCCTCAGAAGCTATCG
TGGAGAGCTATCATCAAATGAGACCCAGGGGCCTCACAGATTGAAAGTTT
GCTAGTCATCAGAGAGGAACAGAAGAGCAACTCTCAGGTCTGAAAGCACC
CTAACAAGGAGAAACTAGGAAATAAAATCATATTATCCTAGCAGAGGACA
ATCTAAGACTCATCCAAAATTATTGGAAAGATGTCTGATTTTACTAATGA
AAATAGATTTATTCTATTATAATAGTGCCTGTGTCTGCGAGTGGTTTACC
AGTTTAATACTCGGCACTGACCCCAACAGGCTGTTTCCCCCTTCTCCCCA
CATTATTTAACACCCGGGG
GGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAACACC
TGAAAAAATGTTCAACATCCTTAAACATCAGGGAAATACAAATCAAAACA
ACCCTGAGATTCCACCTCATACCAGTCAGAATGGCTAAGATCAAAAATTC
AGGTGACAGCAGATGCTGGCATGGATGTGGAGAAAGAGGAACACTCCTCC
ATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGG
CGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACC
TCTCCTGGGCATATATCCAGAAGATGCCCAATGGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATC
TACACAATGGAGTACCACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCCAATGGATGGACCTGGAGGCTTTCATCCCGAGGGAGGTAAACC
ATTCCCTATGAAACTCCCCCCTATGTCCTCCTGGTTAGTGGAAATTACCC
CCCACCCTAGGACACTGGAGAAATTAAAACACTTTTTTTTTTCCTCCAAT
CTATAAAAAAGATACAGCCGTTGTTACCCTCCCCCTCCTCACATTGAGCA
AAAACCGTTGTCGTTGCTCTTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_e16.b1 MSMg01no356_e16.b1 CHROMAT_FILE:
MSMg01no356_e16.b1 PHD_FILE: MSMg01no356_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:49:58 2005
         (545 letters)



>mm_chr10_102860182_102861126
          Length = 945

 Score =  992 bits (513), Expect = 0.0
 Identities = 534/541 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcgtgcgtctcgcccagagggtgctaaatgctcccctgtgcatgaggagtggg 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcgtgcgtcaagcccagagggtgctaaatgctcccctgtgcatgaggagtggg 264

                                                                       
Query: 65  aggaagaaaaagcaagaattgtgacctggttgctgatggacattgaagtgtctgcagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggaagaaaaagcaagaattgtgacctggttgctgatggacattgaagtgtctgcagaaa 324

                                                                       
Query: 125 ctggtcaaaccacaggctgctatataacgaatactgtaaagatctgaagattctaaacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctggtcaaaccacaggctgctatataacgaatactgtaaagatctgaagattctaaacaa 384

                                                                       
Query: 185 ttcagtaaatgggatcttcggacttctaaaagacttcgtgcaaaagagctgtggatgttg 244
           ||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 ttcagcaaatgggatcatcggacttctaaaagacttcatgcaaaagagctgtggatgttg 444

                                                                       
Query: 245 gctctctgggatgcagaggggagatgaccagaagaatctggaggagagatgagcaggaaa 304
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatctctgggatgcagaggggagatgaccagaagaatctggaggagagatgagcaggaaa 504

                                                                       
Query: 305 taaactgagaatcaggaaagtctttcaagtcagtcaggaagcagcaaattgagtttgatt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaactgagaatcaggaaagtctttcaagtcagtcaggaagcagcaaattgagtttgatt 564

                                                                       
Query: 365 taaaaatgtgcagagaatatttcatgttttttgtagcctcagaagctatcgtggagagct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaaaatgtgcagagaatatttcatgttttttgtagcctcagaagctatcgtggagagct 624

                                                                       
Query: 425 atcatcaaatgagacccaggggcctcacagattgaaagtttgctagtcatcagagaggaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atcatcaaatgagacccaggggcctcacagattgaaagtttgctagtcatcagagaggaa 684

                                                                       
Query: 485 cagaagagcaactctcaggtctgaaagcaccctaacaaggagaaactaggaaataaaatc 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagaagaacaactctcaggtctgaaagcaccctaacaaggagaaactaggaaataaaatc 744

            
Query: 545 a 545
           |
Sbjct: 745 a 745


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space:   500225
Effective search space used:   500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)