BAC Information

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BAC

Clone NameMSMg01-356N21
Chromosome10 (Build37)
Map Location 89,692,659 - 89,877,870
singlet/doubletdoublet
Overlap geneAnks1b
Upstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356N21.T7 (MSMg01no356_n21.b1)MSMg01-356N21.TJ (MSMg01no356_n21.g1)
ACCAG466907AG466908
length780784
length of high quality
(start - end)		480 (31 - 510)472 (65 - 536)
definitionCHROMAT_FILE: MSMg01no356_n21.b1 PHD_FILE: MSMg01no356_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:43 2005CHROMAT_FILE: MSMg01no356_n21.g1 PHD_FILE: MSMg01no356_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,692,659 - 89,693,124)(89,877,438 - 89,877,870)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTGCC
CCACCCCCTTCCCATTCTGACTACTAAGTTCAGGCAGTTTTTAGCATCCC
TCTGAGTTCAGTTTCAGGTTGATCTCTGAAAGGAAGGAAGATTCCATCTT
TATCAAAATTAATCCATGTAACATTTTGCAATGAGGCCTTGTAAGACAAT
AAAAAGGAGGAAAAGTCATTTTATTGAATACAGGCAAAATGTCACAGTAT
ATATGGTTACGAAGAAGACTTCGCATTATATGCCCCAGTACAGGGGGACG
CCAGGGCCACAAAGCAGGAGTGGGTGGGTTGGGGAGCAGGGCAGGGGGAG
GGTATAGGGGACTTTTGGGATAGCATTTGAAATGTAAATGAAGAAAATAT
CTAATTAAAAAGAAGACTCTTCACATATATCTCTGTATGTATTTGTGTGT
ATGTATGTGTGTATGCATATATGAACGTATGCATGTGTATATATGCGTAC
ATAGAGACATATACAAACATAGAAAAGGGGCATTTATTTATTTATTTTGG
TCCTTGGTTGATAAATTCTATATAATAACCGAAGGGGAATTTGGGAATTT
ACTTCCTCCTTTCTCCTTCTCCTTCTCCTCCTTCTCTCTCTCCTTCTCCT
TTCACCTCCTTTCTTCACTTTTCTTTTCCTCTCTCTTCTACTCTCCCTTC
TTCATCTTTTCTCCTTCATCCCCTTTATTTTTGCTGTCCTCTTCTCCGTT
CCCCACATTTCTTCTTCTCAAAGGGAAGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATTTGCCATGTTAAAAACAAAATGTACTTGCTGTCT
TTTTCTAAGAATCACCGGGCTGAGGTCATGAAATGGCAATTATGGGATAA
TCAAAACAGAACTTGGGGTACATGACTGAATTGATATACAAATAAAAGAC
TGGGCTTTTGGTCTGCATGAGATGAGATAGTAGAGAGTGACAGAAATTTT
TTTTTAGAATTTTTTTCTAGTAAATGCTGAGCTGTCTAGAGATCTCTGGA
GAATGAATATATTGTTCTTTTAAAAATTTGTTTTCTAACAGGATTTCTGA
CCTTGGTCAGAAATACTAAAAATTACTTAGAGAGCTAACATAGCTCTTTT
AGAATATTTTCTAGCAGCTACCTAGAGGGAACTTCTTGGAAACTGAGCAT
AGCTTTAATAGAATTTTTCTAGAAAATCTAAGAATATTTTATAGCAGCTT
TTCTGACTTTGGTCAGAAAACCCATGAGCTGTCCGGAGAGTTTTTAGAAA
TTTTTCTAGCATGAAACAGCAGAAAGTTATCTCAAATAGACTGCAGAGCC
CAGAGCTATCTACCGAGAGCTGTTTAGGGAGCCATTTCAGCAAATTACAC
GCTGTCCGCTTGTACCCAACCTTTGACTTGGAAACTTCTTTCCCAACTTG
AAAACCCCCTCCTCAGACACCCCCTTAAAAAAGGTGGGCCCTCCCCCCTG
GTGGATTGGGTTTTTTTTTTTAGGGTTGGCTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_n21.b1 MSMg01no356_n21.b1 CHROMAT_FILE:
MSMg01no356_n21.b1 PHD_FILE: MSMg01no356_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:43 2005
         (480 letters)



>mm_chr10_89692450_89693329
          Length = 880

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 10  ggaattctgccccacccccttcccattctgactactaagttcaggcagtttttagcatcc 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaattctgccccacccccttcccattctgactactaagttcaggcagtttttagcatcc 269

                                                                       
Query: 70  ctctgagttcagtttcaggttgatctctgaaaggaaggaagattccatctttatcaaaat 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctctgagttcagtttcaggttgatctctgaaaggaaggaagattccatctttatcaaaat 329

                                                                       
Query: 130 taatccatgtaacattttgcaatgaggccttgtaagacaataaaaaggaggaaaagtcat 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 taatccatgtaacattttgcaatgaggccttgtaagacaataaaaaggaggaaaagtcat 389

                                                                       
Query: 190 tttattgaatacaggcaaaatgtcacagtatatatggttacgaagaagacttcgcattat 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 390 tttattgaatacaggcaaaatgtcacagtatatatggttacgaagaagacttcgcgttat 449

                                                                       
Query: 250 atgccccagtacagggggacgccagggccacaaagcaggagtgggtgggttggggagcag 309
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 450 atgccccagtacagggggacgccagggccacaaagcaggagtgggtgggttggggaccag 509

                                                                       
Query: 310 ggcagggggagggtataggggacttttgggatagcatttgaaatgtaaatgaagaaaata 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggcagggggagggtataggggacttttgggatagcatttgaaatgtaaatgaagaaaata 569

                                                                       
Query: 370 tctaattaaaaagaagactcttcacatatatctctgtatgtatttgtgtgtatgtatgtg 429
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 570 tctaattaaaaagaagactcttcacatatatctctgtatgtatttttgtgtatgtatgtg 629

                                                         
Query: 430 tgtatgcatatatgaacgtatgcatgtgtatatatgcgtacataga 475
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tgtatgcatatatgaacgtatgcatgtgtatatatgcgtacataga 675


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space:   408900
Effective search space used:   408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no356_n21.g1 MSMg01no356_n21.g1 CHROMAT_FILE:
MSMg01no356_n21.g1 PHD_FILE: MSMg01no356_n21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:43 2005
         (472 letters)



>mm_chr10_89876999_89877870
          Length = 872

 Score =  806 bits (417), Expect = 0.0
 Identities = 429/433 (99%)
 Strand = Plus / Minus

                                                                       
Query: 40  tctaagaatcaccgggctgaggtcatgaaatggcaattatgggataatcaaaacagaact 99
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 872 tctaagaatcaccgggctgaggtcatgaaatggcaatcatgggataatcaaaacagaact 813

                                                                       
Query: 100 tggggtacatgactgaattgatatacaaataaaagactgggcttttggtctgcatgagat 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tggggtacatgactgaattgatatacaaataaaagactgggcttttggtctgcatgagat 753

                                                                       
Query: 160 gagatagtagagagtgacagaaatttttttttagaatttttttctagtaaatgctgagct 219
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 752 gagatagtagagagtgacagaaattattttttagaatttttttctagtaaatgctgagct 693

                                                                       
Query: 220 gtctagagatctctggagaatgaatatattgttcttttaaaaatttgttttctaacagga 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gtctagagatctctggagaatgaatatattgttcttttaaaaatttgttttctaacagga 633

                                                                       
Query: 280 tttctgaccttggtcagaaatactaaaaattacttagagagctaacatagctcttttaga 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tttctgaccttggtcagaaatactaaaaattacttagagagctaacatagctcttttaga 573

                                                                       
Query: 340 atattttctagcagctacctagagggaacttcttggaaactgagcatagctttaatagaa 399
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 572 atattttctagcagctacctagagggaacttcttggaaaatgagcatagctttaatagaa 513

                                                                       
Query: 400 tttttctagaaaatctaagaatattttatagcagcttttctgactttggtcagaaaaccc 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tttttctagaaaatctaagaatattttatagcagcttttctgactttggtcagaaaaccc 453

                        
Query: 460 atgagctgtccgg 472
           ||||||| |||||
Sbjct: 452 atgagctatccgg 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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