BAC Information

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BAC

Clone NameMSMg01-356O12
Chromosome10 (Build37)
Map Location 8,787,107 - 8,787,466
singlet/doubletsinglet
Overlap genenone
Upstream geneUst, Sash1, LOC100039173
Downstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5, LOC100039238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356O12.T7 (MSMg01no356_o12.b1)MSMg01-356O12.TJ (MSMg01no356_o12.g1)
ACCAG466937AG466938
length752717
length of high quality
(start - end)
398 (36 - 433)34 (58 - 91)
definitionCHROMAT_FILE: MSMg01no356_o12.b1 PHD_FILE: MSMg01no356_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:46 2005CHROMAT_FILE: MSMg01no356_o12.g1 PHD_FILE: MSMg01no356_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTTG
CCTTTATCTCTTGAGTACAAATTGTTTTTGATCTTGTGATCATAAAGATG
ATTTCCTGTAGTCTCTTAGAGTGTCATGCTAGTAATTATTGTTTGTACAT
TTAAATATTAAATTCACTTGGAATTAAATAATATATATGATAAGCAATAG
GCATTCAATTTCATTTTTCCTACCTTAATGACAAACAACCCCTGTACCAT
TTATTGTAAAGCAATTTCTTCCCTGTGGACTAAAAGGGAAGAAATCCCAT
TACTCAGGATTGTGATTGCCTCTTCCTAGGATCCCTGTTCCATTACTCCA
ATTGTCTCTTTCTGGGCCAACAGTGCGCAGTTTTACAAGACAGATATGGG
GAAAGCTTTCCTAATTTACTCATGGATCTGCATAGATGGGGAGCAAGGAA
AATAGCTGGAAATTTTAAATAAATGGTATACAGAACTTCACTCTCTCATT
CATTCACTACAAAATGATACTGATCATGTTTCTGAGAACTCTCAATTGTA
GTTGATTAACTCTCAATCACTGCCCCCTAGAAAGGCCCCTGTTAATTGAG
GCTAGCAAACAATTCCCTTTCATTCTGCTCTGACCCTGATCATATACTGT
TTGCCACGTTTCTAATAACTCACGTAATTCCTTTTATCCTTCGCTCGCAA
CACCTTTTCCCTACTCTTTGCCGCCTTATTCACCTTTTCTTTACTTCCTT
TT
TGTGAGGCTGGCGCCGCTGGTTCAAAATGAGGNGAACTATAAAGTTACAG
AAAACAAGAGTTCTACCTCCCTCTGCCTCCTGAGAGCTGGGAGAGAGGTT
GCACTTCATGCCTGGACAGGAACTGTACATGCCACTTTGCAGGGGATGGA
GCTGTGACTCAAGTGTGATAGACTTTGGGCAAGCGAACAAGAAAAGTGGG
GTACCGCTGATAAATGACAGTCTATCTTTATATATCGAAAATTACACCAT
TGGCCCCACAAATGAATAAAATGAACTCTAAAATTATTTTTTTTCCCAGA
CAGAAGCTCAGTCATTATACGTTAGTTCACCCCTCCCCACGGATTATTGG
AACGCCGAAGGATTTACTCCCTTCCCCACTTTTCATTTCCCCTCTCAGCC
ATTTCCCTTATCCCTATTCACTCTTTTTCCTACCTCCCCCTTATTTAATC
TTCATTTACCCTTTTTCCCTTCCTTTTTTCCTGACCTCTCTCAGTTCCCT
CCTTCCCCCTTATTTTTTTTCTCATTCCCTCCCCTCTGCCCCTCTCCCCT
TTCCAGCGCTTACCTTTACCCACTTATGTAACATCATTATTTTCTCCTTC
ACCCTTCATCCCCCCCTCTTTTTTTTCCCATTTTCTACGTCATCCTACGG
ACCCTTTTTTTCCCCCTCTATATACCCATATTTAAAATACCTCATTTAGT
ACTTGCCACGTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_o12.b1 MSMg01no356_o12.b1 CHROMAT_FILE:
MSMg01no356_o12.b1 PHD_FILE: MSMg01no356_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:46 2005
         (398 letters)



>mm_chr10_8786669_8787466
          Length = 798

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Minus

                                                                       
Query: 38  tgtttttgatcttgtgatcataaagatgatttcctgtagtctcttagagtgtcatgctag 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 tgtttttgatcttgtgatcataaagatgatttcctgtagtctcttagagtgtcatgctag 739

                                                                       
Query: 98  taattattgtttgtacatttaaatattaaattcacttggaattaaataatatatatgata 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 taattattgtttgtacatttaaatattaaattcacttggaattaaataatatatatgata 679

                                                                       
Query: 158 agcaataggcattcaatttcatttttcctaccttaatgacaaacaacccctgtaccattt 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agcaataggcattcaatttcatttttcctaccttaatgacaaacaacccctgtaccattt 619

                                                                       
Query: 218 attgtaaagcaatttcttccctgtggactaaaagggaagaaatcccattactcaggattg 277
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 attgtaaagcaatttcttccctgtggactaaaagggaagaaatcccattactcaggattg 559

                                                                       
Query: 278 tgattgcctcttcctaggatccctgttccattactccaattgtctctttctgggccaaca 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 558 tgattgcctcttcctaggatccctgttccattactccaattgtctctttctgggccaacc 499

                                                                       
Query: 338 gtgcgcagttttacaagacagatatggggaaagctttcctaatttactcatggatctgca 397
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 498 gtgcgcagttttacaagacagatatagggaaagctttcctaatttactcagggatctgca 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)