BAC Information

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BAC

Clone NameMSMg01-356P12
Chromosome10 (Build37)
Map Location 80,617,068 - 80,617,397
singlet/doubletsinglet
Overlap genePias4
Upstream geneMidn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a
Downstream geneEef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356P12.T7 (MSMg01no356_p12.b1)MSMg01-356P12.TJ (MSMg01no356_p12.g1)
ACCAG466983AG466984
length780801
length of high quality
(start - end)		199 (122 - 320)330 (77 - 406)
definitionCHROMAT_FILE: MSMg01no356_p12.b1 PHD_FILE: MSMg01no356_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:50 2005CHROMAT_FILE: MSMg01no356_p12.g1 PHD_FILE: MSMg01no356_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGA
GAATGTCCCAGTCAAACTGGGCAAGCTCTGGAGAATAAGCAACAACAAAT
ACAAGAGTAAAATGTATGTGTGTATTAGTCAGCTACTGCTGTATAACAAA
TACCCCCTTAAGATATATATTTAGGGCCAGTGGGTAAGGCATTTGCTGTC
AAGCCTGCTGATCTAAGTTACATCCTAGGGATCCAACTGATATCTGAGTC
TTCTGATCCCCACAAGTGCAGCACATGCACACCCTCACTCCTACACTCTC
TCCACAACTATGAATTTTAATTTAACACTTAGCATCCATATTAGTCCCAC
TACCAACAAGTAACGCCAACTATTTTCAGACAGACCACATTTACACACCT
TAGTAACCTGCATTTTGGGTTCTTAATCATCTTTTTCCATCCTAGTTTAT
CAATTACACTGATCCAAACTTGATTAACTGTCTTCTTTAGGGCTTTCCTA
TACCTGTATAATACCTCTTGCATCTATACCTTAGGGGATTAATTCCCCCT
ATTCTCTCCCACTGCTTCTCCCCATCCTCGCAAGTTCTTGTATTGGTCCC
TCCCGCTTTTTCCCCATTCCATCAACATGAGGCATTAGTCCCCCCCAGGC
CTTTTCCTTTCCCTTCCTTCCCTTTTTCTTTTCTTATATTCGCGCGGCGA
TATACCTGATATTGGCATTCTTATACCCCCTCTCTGCTTCTGTTTTCTCC
CTTCTCATTTATGTCCCTTTCCCTTCCCCG

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGCACACAGGGATGCCAGGC
ATAGTACACCTTGTGCCTGGGCCCAGACCTGTGCACTCTGGTGCCTACAG
GCTGCTGTCGAAGATCCTGAGTGAGTGTGAGGGCGCGGATGAGATTGAGT
TCCTGGCGGAAGGCTCATGGCGTCCAATCCGTGCAGAGAAGGAGCCAAGC
TGCAGCCCACAGGGCCCCATCCTGGTGCTAGGTGAGTCCTGCACACAGCA
CCCACCACACCAGCCAGCCAGGCCGTTGTCTGAGCACTGTTGCCCTGTCC
CCACAGGCACCTCGGACGCCAATGGGCTCGCACCAGCCTCCAGCACCCCC
GGTATAGGCAGTTTCCCCCACTGTCCCATGCAGCGCCGGCAGCGTTGCAG
GGGCAGCAGGCAGCCTGGAGAATGGCTAGACCCCTACCGACTTGCTGCAC
CTCCCACTGTACAGTTCGTCGTCCTCGTAAGATGAATATGACGACCATTA
CGACCATGATCTCTATTTTTTTTTCTCCTCGGTCTGATGCGCCGCTGCCC
CTTTCTACATCGGCTTCGTTGCCCTCCGTGTTCGATCTCTGTTGCCGGTT
CTCTTTGGCCTTCTCTTTTTTCCCGCCTTTTCTTCTCCTTACTTATTTTC
TCTATATTCTTCCACCTTTTCCTTTTTCTCCCTTTACCCTTTTTTGCTTA
TCTCACTCCTTCCGTTTTTTTTCTCACCCTTTTCTCTCCTCTCTTTATTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_p12.g1 MSMg01no356_p12.g1 CHROMAT_FILE:
MSMg01no356_p12.g1 PHD_FILE: MSMg01no356_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:51 2005
         (330 letters)



>mm_chr10_80616868_80617597
          Length = 730

 Score =  615 bits (318), Expect = e-180
 Identities = 327/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggcacacagggatgccaggcatagtacaccttgtgcctgggcccagacctgtgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tccaggcacacagggatgccaggcatagtacaccttgtgcctgggcccagacctgtgcac 471

                                                                       
Query: 61  tctggtgcctacaggctgctgtcgaagatcctgagtgagtgtgagggcgcggatgagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tctggtgcctacaggctgctgtcgaagatcctgagtgagtgtgagggcgcggatgagatt 411

                                                                       
Query: 121 gagttcctggcggaaggctcatggcgtccaatccgtgcagagaaggagccaagctgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gagttcctggcggaaggctcatggcgtccaatccgtgcagagaaggagccaagctgcagc 351

                                                                       
Query: 181 ccacagggccccatcctggtgctaggtgagtcctgcacacagcacccaccacaccagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 350 ccacagggccccatcctggtgctaggtgagtcctgcacacagcacccgccacaccagcca 291

                                                                       
Query: 241 gccaggccgttgtctgagcactgttgccctgtccccacaggcacctcggacgccaatggg 300
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gccaggccggtggctgagcactgttgccctgtccccacaggcacctcggacgccaatggg 231

                                         
Query: 301 ctcgcaccagcctccagcacccccggtata 330
           ||||||||||||||||||||||||||||||
Sbjct: 230 ctcgcaccagcctccagcacccccggtata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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