BAC Information

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BAC

Clone NameMSMg01-357B10
Chromosome10 (Build37)
Map Location 43,716,659 - 43,717,086
singlet/doubletsinglet
Overlap geneAim1
Upstream geneSobp, 9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1
Downstream geneLOC546475, Speer5-ps1, Atg5, LOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357B10.T7 (MSMg01no357_b10.b1)MSMg01-357B10.TJ (MSMg01no357_b10.g1)
ACCAG467075AG467076
length751760
length of high quality
(start - end)
464 (49 - 512)428 (80 - 507)
definitionCHROMAT_FILE: MSMg01no357_b10.b1 PHD_FILE: MSMg01no357_b10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:00 2005CHROMAT_FILE: MSMg01no357_b10.g1 PHD_FILE: MSMg01no357_b10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCGGTTTGTGAGAATTTTATTAAGAATTTTCACATTCATATTCA
TAAGGGAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGGTCTTTTGTGGTT
TAGGTATCAGTTTGACTGTGGCTTCATAGAATGAACTGGGTGGTGCCCCT
GATTCTTTGGCTTGTACAGTTTTCTTTTACTGTGATATATTTTAATTTTA
ACTATAAAATTAATATATGTTACTAAATGTTTTTAAACAATACTATGAGA
TAGAAAATAACTTTATATTCAAGTTCTACTTTGATTTATCTTACTGTGAT
AAAACACTGATCAAAATTAATTTAGGGGAAGAAATACTTACACTTCCAGG
TATTTCCATAAGGTTCATCATTGAAAGAAGTCAGGGCAGGGACTCAATCA
GGAGCTTGGAGGTTGAAGCAGAAACCGTGGAAGAACACTGCTTGCTGGCA
CCCTCACAGGCTTACACTCAGCTGCTGCTGCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCCCCCCTTCCCCCCCCCCCCCCTTTTTTTCTCCCTC
TTCCTCTACTACAAATTATCTCTTTTTCCATNTATCTTTTTTTTTTTTCT
TACTTCTCCTTTTTCACCTTTCCCAACCTTTCTTCCTTCCCTTATTATTT
C
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTACACA
ACTAAATCCAGGACAGCCAGAGCTACACAAAGAAACCCTGTCTCAAAACA
AAACAAAAGGTACATGGTAAACAAATAGAAACTTATTGCACATGTACAAC
CCCTGTAAAAATACAACCTGAGCCCCTCACTGCCTCTAGGTTTAGAAACA
TCCCATCTAAATAAGAATTAGTACTTACCATAGAGTCTGATAAGGACATT
CCAGAAAAGGAATGGCCTGGGTCATACCGGCTTGCTTTGAAAAGGCCCAG
GAAGTCCGTGTCCACGCTCCCAACATTTGGCAGGTTTGACTTCAGAACAC
CTTCCACGCCATCGCTGTTCTTCAGTTTGGGTAAGTCTGAAAGGTTGTTT
TCTGGCAATTGTAGGTTGCCCTGAGAATTCACATCTTCCTTGCTTCCCTC
TTTTTGTGGGTACTTTTCCCTGTGGCTGGAACCCACATGAGATGTATTTG
AATGAGTTGAATTGAAGACCTTTTAGGAATTGTGGGGCGCAAGGTGTGGA
CTGTTTTTTTGTCGAACCACAATGATTACCCCACTCTTTTCGGCTTGTCC
ATCTTTAAATGTAACATTTATCTTTCACTTTTAATTCTTCTTACAATTCC
CACTTATTCTTGATTTGTCCCACCTATTTCATTTAATTATCTTTCTTTGT
TTTTGAACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_b10.g1 MSMg01no357_b10.g1 CHROMAT_FILE:
MSMg01no357_b10.g1 PHD_FILE: MSMg01no357_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:00 2005
         (428 letters)



>mm_chr10_43716459_43717286
          Length = 828

 Score =  797 bits (412), Expect = 0.0
 Identities = 424/428 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggccagcctggtctacacaactaaatccaggacagccagagctacacaaagaaaccct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggccagccaggtctacacaactaaatccaggacagccagagctacacaaagaaaccct 260

                                                                       
Query: 61  gtctcaaaacaaaacaaaaggtacatggtaaacaaatagaaacttattgcacatgtacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctcaaaacaaaacaaaaggtacatggtaaacaaatagaaacttattgcacatgtacaa 320

                                                                       
Query: 121 cccctgtaaaaatacaacctgagcccctcactgcctctaggtttagaaacatcccatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccctgtaaaaatacaacctgagcccctcactgcctctaggtttagaaacatcccatcta 380

                                                                       
Query: 181 aataagaattagtacttaccatagagtctgataaggacattccagaaaaggaatggcctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataagaattagtacttaccatagagtctgataaggacattccagaaaaggaatggcctg 440

                                                                       
Query: 241 ggtcataccggcttgctttgaaaaggcccaggaagtccgtgtccacgctcccaacatttg 300
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 441 ggtcataccggcttgctttgaaaaggcccaggaagtccgcgtccacgctcccaacattcg 500

                                                                       
Query: 301 gcaggtttgacttcagaacaccttccacgccatcgctgttcttcagtttgggtaagtctg 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaggtttgacttcagaataccttccacgccatcgctgttcttcagtttgggtaagtctg 560

                                                                       
Query: 361 aaaggttgttttctggcaattgtaggttgccctgagaattcacatcttccttgcttccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggttgttttctggcaattgtaggttgccctgagaattcacatcttccttgcttccct 620

                   
Query: 421 ctttttgt 428
           ||||||||
Sbjct: 621 ctttttgt 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)