BAC Information

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BAC

Clone NameMSMg01-357F21
Chromosome10 (Build37)
Map Location 111,746,663 - 111,747,095
singlet/doubletsinglet
Overlap geneKcnc2
Upstream geneNap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2
Downstream geneLOC100042639, 4921506J03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357F21.T7 (MSMg01no357_f21.b1)MSMg01-357F21.TJ (MSMg01no357_f21.g1)
ACCAG467287AG467288
length763766
length of high quality
(start - end)
514 (42 - 555)456 (70 - 525)
definitionCHROMAT_FILE: MSMg01no357_f21.b1 PHD_FILE: MSMg01no357_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:20 2005CHROMAT_FILE: MSMg01no357_f21.g1 PHD_FILE: MSMg01no357_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGCATATCGACACACTATTGGCTTATTCAAACATCAGCAGAAAAATCAC
ATGTACGTGCAGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTTCAGAT
AGCCCTGTTATGTCTTCACATTCCCCTTTATCTTATGGTCAAGATGTTCC
CAGGAATGTTTTAACTACAGGGCATACCCAGGTTTGTTTTTCTCTTTTCT
CAGCCCCAGGTAGCCTCTAGGCTCACAAACAACCAGCGATTTCTGAGTAC
TTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCATTCCCCTCT
TCTTCTACTAAGTAATTCTAATCTTAGAATTTCAGAAGTCTATATCTCTA
TGTGGAGAATAGAAATCATACCTTTTCTATCTTAACTATAAGTTGGTGTT
GACGCTGGAGGACCATAAGCTATAACAAAAACAGAATAAGAATAGTAAAC
AGAACTAGGCAGGGACCCTTCTAGCAAGGCTTGAGGGTCTGGGCATGACG
CAGGTGTACGTAGATCAGATCTCTGGCTGAAACTGGTGAGATGTCTTTGG
GGTACCCGGCTCTTTCTCTGTAGCCAGTTGTGACCAGATTTCTTTTCTGC
CCACCTGGCAACCTTTTTATTTTGCATATCGATCCTTTTTTCACCTCCCC
CGTGTTTACACCTTTTTTTTAAAAATGTAGGGGCCTGGGAGCCCTCTAAG
GATTTCCAAAAAG
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTCCTCAAAATTGCAGCTTGTCAGAGATGA
AGGTTTGACACAGCTGAGGAATCTTGCCTTAAGTTATAACTGAAGAGTGT
GAAAGTCCCTCACATTCAAAGTTTCTAGTTCCCAGCGTCCAGCAGGAAAG
GCTGTGAGTACTTAAGGTTCAGAAGGTTTCAACATTGGTGGTCGATGATG
GGGTGATGCACCTGAAATTTCATAAGGAAGAAAGCTGACTTGCAAATGGC
CTGGTGTTCCTTCTCAGTAGCTGGGAGACAAAGGTAATGGTTAAATATTG
ATGTATTTTTGGTTTTAGCTTTCCTTTGCTATAGAATAAAAAACTGAACA
CTCAAAAAGTATGACTGGGCTATGTTATTTGAAGCTTATTCTTTTTATCG
AGGGATATAACATTCATTTTTATTTTCTTTGCTCTGTGTGTGTGTGTGTG
TGANTGAAANAGAGAGAGAGAGAGAGATAGAGAGAGATTTTTTATTTTTT
AATTTTTTTGTTTTTTTTGTTATAAAACAATTTTTATATAAATATTATTT
ATATTTTTGTTTGGTTTTGGTATTTTTTTTATTTTATATATAATAGGATT
AATAGTTTTTTATGATGAATTTATTTGTTTTATAAATTTGTTTAATATTG
TATTTTATATATTATTTGTTTATTTTTTTTTTAACTTATTATATGTGTTT
ATTTTTTATATTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_f21.g1 MSMg01no357_f21.g1 CHROMAT_FILE:
MSMg01no357_f21.g1 PHD_FILE: MSMg01no357_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:20 2005
         (456 letters)



>mm_chr10_111746463_111747318
          Length = 856

 Score =  806 bits (417), Expect = 0.0
 Identities = 429/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcctcaaaattgcagcttgtcagagatgaaggtttgacacagctgaggaatcttgcct 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcctcaaaattgcagcctgtcagagatgaaggtttgacacagctgaggaatcttgcct 260

                                                                       
Query: 61  taagttataactgaagagtgtgaaagtccctcacattcaaagtttctagttcccagcgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagttataactgaagagtgtgaaagtccctcacattcaaagtttctagttcccagcgtc 320

                                                                       
Query: 121 cagcaggaaaggctgtgagtacttaaggttcagaaggtttcaacattggtggtcgatgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcaggaaaggctgtgagtacttaaggttcagaaggtttcaacattggtggtcgatgat 380

                                                                       
Query: 181 ggggtgatgcacctgaaatttcataaggaagaaagctgacttgcaaatggcctggtgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggtgatgcacctgaaatttcataaggaagaaagctgacttgcaaatggcctggtgttc 440

                                                                       
Query: 241 cttctcagtagctgggagacaaaggtaatggttaaatattgatgtatttttggttttagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctcagtagctgggagacaaaggtaatggttaaatattgatgtatttttggttttagc 500

                                                                       
Query: 301 tttcctttgctatagaataaaaaactgaacactcaaaaagtatgactgggctatgttatt 360
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 501 tttcctttgctatagaataaaaaactgaatactcaaaaagtatgactgagctatgttatt 560

                                                                       
Query: 361 tgaagcttattctttttatcgagggatataacattcatttttattttctttgctctgtgt 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagcttattctttttattgagggatataacattcatttttattttctttgctctgtgt 620

                        
Query: 421 gtgtgtgtgtgtg 433
           |||||||||||||
Sbjct: 621 gtgtgtgtgtgtg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)