BAC Information

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BAC

Clone NameMSMg01-357K22
Chromosome10 (Build37)
Map Location 10,635,566 - 10,635,980
singlet/doubletsinglet
Overlap geneGrm1
Upstream geneLOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357K22.T7 (MSMg01no357_k22.b1)MSMg01-357K22.TJ (MSMg01no357_k22.g1)
ACCAG467522AG467523
length782786
length of high quality
(start - end)		487 (40 - 526)415 (73 - 487)
definitionCHROMAT_FILE: MSMg01no357_k22.b1 PHD_FILE: MSMg01no357_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:44 2005CHROMAT_FILE: MSMg01no357_k22.g1 PHD_FILE: MSMg01no357_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:51:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
CATTTCACCTCATTGACACTAAGAGTTGTTATTTCTCATTGGATAAAAAC
CACCTTATGGGCTACGAAGTAGTTTACAGTTTATAATTTGCGTGTCATCC
ATGAGTGCTTGGTTTGAACATTTTTTTGTGTACTTTTGGCCATTAGCATG
TCTTTTTGGATTTTAGTTCAGCTCCGCCTACTTTTTGACAGCTGTTTTGT
CTTATTGTTGATTTATGAGTTCTTATAATAATTCTGAATAAAAGGTACTA
ATTAAACATATGATTGGCCAATATTCTCTACCATTCTCTAGGTGGCTGTG
TATCAATACTCATAAATTTCTAACTTTAATCAAGTCAAATTTCCCTATTC
TACTTTATTTTATTAGCCATGTGTTTTGTATCATTATTTCTAAGAATCCA
ATGTGAAGTCCAACACGAAGTAGACTTGCCCCTATGTTTTCTCTTTTGNT
TTATAGNTTTATGCCTTGAATGCAAGTCATGGCTCCGACTGAATGACTTT
TGCATTCATTGTGAGGTAGGTGATTCCATTTCATGTTGTGTGAAGATTGT
CCAGTTACCTCANTATTTTCTATCAAACAGAAGTATTCTTTTGTTTTATT
TTCTGGAAAACTTGGTAGTACCGGGGAGGAGGACTTTACTCTACCCCCCC
CGGGTCAACTTTATTAATTCACAAACCTGGCTTTGAACCCTCCCCCCCCC
CCTTTGTTTGAAAAAATCCTGTTGGAAGATTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCCTGAGGAGAGCTCTAGAAGCCATCTT
CCCAGGGAGAAACGCTCAGAGAGGAGGCAGCACTTCCAGCACCAAACTTC
TTTTTCTTACTTATTAATGAAACAAATGAGTTTTCAAACCCTGTGCAGCC
AAAATATATGTTTACAGAAAACAATTTTCAACACATGTCTGAAAATGAGT
TGAGAATGGAAAAATTCCAACTCAGAAAAGTAAAACTGATATACAACTCT
CATATTATGTCTAATCAGCTTTTTTATTTTCAGTAAAACAAGGATTTAAT
GGATAAACTGTGATAGTACCTGACATAATCTTCCATAGCACATAGGAATA
ATTCATTTTGCTTATCTATTCTTCTAGCAATTTTATATATGTGTATAAAA
TTTGTTAAACAAAATGAGGATCACAAGATATTTAGGTCTCAGTTAGTTCT
TTCCCATAACTATCTTTTTAATTACTTTTATCACATTTTCTTTTTATTAC
CTTAAACTGNTCTTTGAAAGGGGCAAAAACATGTGTGTGTGTGTGNNNNT
NNNNNNNNNNNNNNNNNNNNAAAAAAAAATTCAAATTAATATTTTTTGGG
TGGGCCACNCCCCCTTCTTCTGTGTTTCTCCCTCCACCCCCAAAGGGTTT
TTTTTTAAAAAACCCTTCNTAAACTAAAAATTTTTTATTTGGCCTGGGAT
NCNAGAAACATCACGACCGTCTGACCCAACTNTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_k22.g1 MSMg01no357_k22.g1 CHROMAT_FILE:
MSMg01no357_k22.g1 PHD_FILE: MSMg01no357_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:51:45 2005
         (415 letters)



>mm_chr10_10635366_10636180
          Length = 815

 Score =  779 bits (403), Expect = 0.0
 Identities = 412/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgaggagagctctagaagccatcttcccagggagaaacgctcagagaggaggcagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgaggagagctctagaagccatcttcccagggagaaacgctcagagaggaggcagca 260

                                                                       
Query: 61  cttccagcaccaaacttctttttcttacttattaatgaaacaaatgagttttcaaaccct 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttccagcatcaaacttctttttcttacttattaatgaaacaaatgagttttcaaaccct 320

                                                                       
Query: 121 gtgcagccaaaatatatgtttacagaaaacaattttcaacacatgtctgaaaatgagttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgcagccaaaatatatgtttacagaaaacaattttcaacacatgtctgaaaatgagttg 380

                                                                       
Query: 181 agaatggaaaaattccaactcagaaaagtaaaactgatatacaactctcatattatgtct 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 agaatggaaaaattccaactcagaaaagtaaaactgatatataactctcatattatgtct 440

                                                                       
Query: 241 aatcagcttttttattttcagtaaaacaaggatttaatggataaactgtgatagtacctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcagcttttttattttcagtaaaacaaggatttaatggataaactgtgatagtacctg 500

                                                                       
Query: 301 acataatcttccatagcacataggaataattcattttgcttatctattcttctagcaatt 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 acataatcttccatagcacataggaataattcattttgcttgtctattcttctagcaatt 560

                                                                  
Query: 361 ttatatatgtgtataaaatttgttaaacaaaatgaggatcacaagatatttaggt 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatatatgtgtataaaatttgttaaacaaaatgaggatcacaagatatttaggt 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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