BAC Information

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BAC

Clone NameMSMg01-357O02
Chromosome10 (Build37)
Map Location 63,336,973 - 63,337,422
singlet/doubletsinglet
Overlap geneCtnna3
Upstream geneCxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357O02.T7 (MSMg01no357_o02.b1)MSMg01-357O02.TJ (MSMg01no357_o02.g1)
ACCAG467671AG467672
length746745
length of high quality
(start - end)
395 (72 - 466)450 (74 - 523)
definitionCHROMAT_FILE: MSMg01no357_o02.b1 PHD_FILE: MSMg01no357_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:00 2005CHROMAT_FILE: MSMg01no357_o02.g1 PHD_FILE: MSMg01no357_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCAAGGCCTTTCACTAAACATGATAAAAGCAATCTACAGCAAACCAGT
AGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAAT
CAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTA
CTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGAT
ACTAATTGGAAAAGAGGAAGTCAAAATATCACGTTTTGCAGATGATATGA
TAGTATATATAAGTGACCCTATTTATTCCACCAGAGAACTCCTAAAGCTG
ATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAACAAATC
AATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAACATAAAATATCTCGGCGTG
AATCTAACTAAGGAAGTGAAAGATCTGTATGATCAAAACTTCTAGTCTCT
GAATAAAGAAATTAACGAAGATCTCCGAAGATGGAAAGATCTCCCCTGCT
CCTGTATCGGCATGATCACCTTGGCATAATGGTTATCTTGGCATTAGCTA
CCTATATTACTTTTGCCCCTTCTTCATTACATTTCTCCTTTCCTTTTTTC
CTCCGATTTCCCCCTGAGTTTCCTGCCATTCTCTTTTTGGATCACN
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGGGGAGTCTCGTTTTAATATTTAC
ACATCTAATGAGAATGGTAACTGTCTGACATGCACAGCATTCAAAGATCC
TAGCACTCAGCAGGCTAAGGAGAACTACAAGTTTGACGCAGACTGAGGTA
TTCAGGGAAGCCCTGTTCCAGATAATGAACAGTAACAACAAGACTGCTTA
TAATGCTTGATTGAAAAGGGATTCTGGCCCCTTCCTTTCAGAGTAGCTTT
AAGAACGTAACTCAAACATTAGCACAAAAAAGTACTAAGACACAAAAGTC
TGCTGCTCAGAGTACGTAATGGAACATTTGAAATTGTCTCGTGACTCTAC
GATATCAAAAAAGTCTACTTTTGCTGTTCCTATACAGTTCATTTATTTCC
ATTTCTCTCAGATAACCTTAAAAGTTTTATCATTGAGTTTATTTTTCTAT
TAGGATGTGGAAAAGCTAATTTGAGAAAATGGATCTTCCGGAAAAGAAAG
TATGAACTGTTTGCAACTGAAGGTAACAGATGAGAGGTGATCTGTGGCGT
AAAGAGAAAGGCACAGCCGCCAACTCAGTCCTGAGTTCGCGGAATCGAGT
AGGGTAAAGACATCGGGGTAAGAACGGTGACCGCCTGGGCTTCCCCGCGT
TTCGTTCGACGTATTGAGCCTCCGGGCNNATAAATCGTTCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_o02.g1 MSMg01no357_o02.g1 CHROMAT_FILE:
MSMg01no357_o02.g1 PHD_FILE: MSMg01no357_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:00 2005
         (450 letters)



>mm_chr10_63336773_63337622
          Length = 850

 Score =  816 bits (422), Expect = 0.0
 Identities = 443/450 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggggagtctcgttttaatatttacacatctaatgagaatggtaactgtctgacatgc 60
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 650 actggggagtctcattttaatatttacacatctaatgagaatggtgactgtctcacatgc 591

                                                                       
Query: 61  acagcattcaaagatcctagcactcagcaggctaaggagaactacaagtttgacgcagac 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 acaccattcaaagatcctagcactcagcaggctaaggagaactacaagtttgacgcagac 531

                                                                       
Query: 121 tgaggtattcagggaagccctgttccagataatgaacagtaacaacaagactgcttataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 tgaggtattcagggaagccctgttccagataatgaacagtaacaacaagactgcttataa 471

                                                                       
Query: 181 tgcttgattgaaaagggattctggccccttcctttcagagtagctttaagaacgtaactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgcttgattgaaaagggattctggccccttcctttcagagtagctttaagaacgtaactc 411

                                                                       
Query: 241 aaacattagcacaaaaaagtactaagacacaaaagtctgctgctcagagtacgtaatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaacattagcacaaaaaagtactaagacacaaaagtctgctgctcagagtacgtaatgga 351

                                                                       
Query: 301 acatttgaaattgtctcgtgactctacgatatcaaaaaagtctacttttgctgttcctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 acatttgaaattgtctcgtgactctacgatatcaaaaaagtctacttttgctgttcctat 291

                                                                       
Query: 361 acagttcatttatttccatttctctcagataaccttaaaagttttatcattgagtttatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 290 acagttcatttatttccatttctctcagataaccttaaaagttttatcattgaatttatt 231

                                         
Query: 421 tttctattaggatgtggaaaagctaatttg 450
           |||||||||| |||||||||| ||||||||
Sbjct: 230 tttctattagtatgtggaaaatctaatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)