BAC Information

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BAC

Clone NameMSMg01-358C10
Chromosome10 (Build37)
Map Location 73,203,638 - 73,204,149
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC432471, LOC544705, LOC100039981, LOC623191
Downstream genePcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358C10.T7 (MSMg01no358_c10.b1)MSMg01-358C10.TJ (MSMg01no358_c10.g1)
ACCAG467876AG467877
length737735
length of high quality
(start - end)
515 (35 - 549)474 (64 - 537)
definitionCHROMAT_FILE: MSMg01no358_c10.b1 PHD_FILE: MSMg01no358_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:21 2005CHROMAT_FILE: MSMg01no358_c10.g1 PHD_FILE: MSMg01no358_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAAG
CAGGTACATAGGCCATACAAATGAACATCTCTTGAATTCAACACTGGGGA
TTCTTTATAAGGAGGAAAAGGTATTTACTTACATCTCGAGCTGACCCAGA
TGTGATATTTTATGAAATGTCCAGTTACCAAGGTGTTGTGTTATTGCTAG
AGAGAATTTGACATGCCAACATGTTTCTGAAATAGTGATGGTTGGCTTGA
CTCTAGGAAAATATGTCAGTCTTTTCAGAAGTGTAGTTTAAAAAGAACTT
GGTGTTCTGTGGAAAAAGCAAAGGTTGGATGGTTGTATTTTATATTGTTA
AGTGCCTTTTCGTGATGCAATAAGTCCTGCAGCGGTCTATACAGAGGAAG
TCATAGGTAGCATCACACAGCTCTTACTGCAACAAGAGCACCGAGACACA
CACTTCATTCCAGGCTACATACTTATGCAGAACATACAATTTTTACTCGC
CAATTGCTGCATGAGGGGATTTAAAGTATATAAGTGACCTATCTAAAGTC
ACAGTTCTATGTCAGAATCCAGGCTTTGACTTTATAGTGAAAATCTCCCC
TTTATGTACTGTTAATGATAGAATGGCTCATGGGACCTTGCTTTAGGTTT
CCTCAGGAGCCTTGCGGGACACATAAAAAATGTAAAGTTGAAAACCAAGC
TGCTAACAAAAAAATTGTCCTCTGCGGAGTTTTTTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTGGATTCTTCAGAAGGTGTATAAATGGGAGACTCT
CAAGAGATGGTGGGTTGTTCGTTGGTTACTATTGGTTACAATTTGTTAAA
CAGTTGTGTGCAAAGAAGAAATAACAAAGAATTAGAGATCTTGATGGCAA
AGATATAACTTGCCCCAAGGAACTCAATGTCTCTAATCAGCAGAAAGTAA
TCTAATGATAATGTTGCCCCTTTCCCCTCTGTTTTAGTTAGGGTTTTACT
GCTGTGAACAGTCACCATGACCAATGCATGTCTTATAAAGGACAACATAT
AATTAGGGCTGGCTTATAGGTTAAGAGGTTCGGGTCATTATCATTAAGGT
GGGATCATGGCAGCATCCAGGCAGGTTTGGTGCAGGAGGAGCTGAGAGTT
TTACATCTTCATCGGAAGACTGCTAGCAGAACACTGGCTTCCAGTCAGCT
AGGACTAGGATATTAAAGCCCATGTCCACAGTGACACACCTACTCCAACA
AGGCCACACCTCCAAATAGTGCCACTCCCTGGGCCAAGCATATTCAAAGC
ACATTACCCTCTATCCCTTTTTTTCTCTCTTATGTAGCTTTAAGGGGATT
GAAAAAGGCCTGACAAGAACCAATGGGATAAAAATGGGTAAGTGAAAAAC
AATCCCCCCACTTAACTAAATAAACTCCGTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_c10.b1 MSMg01no358_c10.b1 CHROMAT_FILE:
MSMg01no358_c10.b1 PHD_FILE: MSMg01no358_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:21 2005
         (515 letters)



>mm_chr10_73203434_73204349
          Length = 916

 Score =  897 bits (464), Expect = 0.0
 Identities = 500/512 (97%), Gaps = 1/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaagcaggtacataggccatacaaatgaacatctcttgaattcaacactggg 64
           |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 205 gaattcatgaagcaggtacataggccatacaaatgtacatctcttgaattcaacactggg 264

                                                                       
Query: 65  gattctttataaggaggaaaaggtatttacttacatctcgagctgacccagatgtgatat 124
           |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||
Sbjct: 265 gattctttataaggaggaaaagatatttacttgcatctcaagctgacccagatgtgatat 324

                                                                       
Query: 125 tttatgaaatgtccagttaccaaggtgttgtgttattgctagagagaatttgacatgcca 184
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttatgcaacgtccagttaccaaggtgttgtgttattgctagagagaatttgacatgcca 384

                                                                       
Query: 185 acatgtttctgaaatagtgatggttggcttgactctaggaaaatatgtcagtcttttcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatgtttctgaaatagtgatggttggcttgactctaggaaaatatgtcagtcttttcag 444

                                                                       
Query: 245 aagtgtagtttaaaaagaacttggtgttctgtggaaaaagcaaaggttggatggttgtat 304
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtgtagttaaaaaagaacttggtgttctgtggaaaaagcaaaggttggatggttgtat 504

                                                                       
Query: 305 tttatattgttaagtgccttttcgtgatgcaataagtcctgcagcggtctatacagagga 364
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 505 tttatattgttaagtgccttttcctgatgcaataagtcctgcagcggtctatgcagagga 564

                                                                       
Query: 365 agtcataggtagcatcacacagctcttactgcaacaagagcaccgagacacacacttcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtcataggtagcatcacacagctcttactgcaacaagagcaccgagacacacacttcat 624

                                                                       
Query: 425 tccaggctacatacttatgcagaacatacaattttt-actcgccaattgctgcatgaggg 483
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 625 tccaggctacatacttatgcagaacatacaattttttactcgccaattgctgcatgaggg 684

                                           
Query: 484 gatttaaagtatataagtgacctatctaaagt 515
           |||||||||| |||||||||||||||||||||
Sbjct: 685 gatttaaagtgtataagtgacctatctaaagt 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 916
Length adjustment: 10
Effective length of query: 505
Effective length of database: 906
Effective search space:   457530
Effective search space used:   457530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)