BAC Information

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BAC

Clone NameMSMg01-358G09
Chromosome10 (Build37)
Map Location 86,571,092 - 86,747,496
singlet/doubletdoublet
Overlap gene1700113H08Rik
Upstream geneSyn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
Downstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358G09.T7 (MSMg01no358_g09.b1)MSMg01-358G09.TJ (MSMg01no358_g09.g1)
ACCAG468063AG468064
length726726
length of high quality
(start - end)
567 (36 - 602)506 (64 - 569)
definitionCHROMAT_FILE: MSMg01no358_g09.b1 PHD_FILE: MSMg01no358_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:39 2005CHROMAT_FILE: MSMg01no358_g09.g1 PHD_FILE: MSMg01no358_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,571,092 - 86,571,635)(86,747,138 - 86,747,496)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCC
GATTTCATGGGTAGGATGCACCAGAGATGTGGAGTGCTTTCTTTAGCTTC
AGGAGTGTCTTAGGTCCATGAAACCATCATTCCTACAGAGTTTCATTGAA
ACTTATCCATCGGAGCCTCTCTGTAGCAATGCTGTCTGTCACTAGATTTT
TAAACTCACCCCTCCCCCACCCCGGTGTGTGTGTGTGGAAAGGTGTATTT
CCTCATATATGAAACTCTGCCTGTGTTATATGCTACTCACCCCTCCCGAC
TCCCTGATATACTAAACCTTCTGGTTTATTCAAGATTCTGATATATTCTG
AATGTCTTATAAGCTCAACAGGTCAACTTGAAAATCTATCGGAGTCAGAA
ATACTTTTGAACCATCTCCATTTCTTTTCTACAGAATTCTGTATTAGTTT
TTATAACCATACATGCCCCTTAATGAATACAAATTTTAGTTAGAACAGAA
CAGACATCCAGATGACATCCTAACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACATATACCTTACACACT
CANNTGTACAAAGGCCAAGACATATTCCGAGGAAAAGACCAAGTTGCCCC
ACAGATAACCTGGTTAGACATGTGAATACTTTGGAAAGAAACAAAAAGCC
TGCCCCCGCAAAGGTGATTCTCTTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCTGTGTTAGTTTAGAGGATTCTTGATAACGATTATCA
TGTAGTAGATGTGTGGGTTAGCTTTTACTGCTTAACAATCTAACCCAAAT
TCTATAGCATGAAAAAAACTCCATTTTCTCGTGATCCTGATATTTGGCAG
TTGAGGTGGGGTTCAGCCTGGCAGTTCTGGTCTTGGCTGGTCCCTTCTAG
GCATTTGCCAACAGTTGCTGGGATACCTTGGCTCCCAGCATTCATTGCAC
TTCTCCGTCCTTTGCTGATAAATGCAGGCTTGTTCCTCTGGAAGAGACAT
CTAAGAGAGCAGATGGGAAGAAGGCCTCTTGAAGTCTGGGCCTCATAACT
GGCACAAGATTACCCCTACTGTGTTGTACTAGCCAAAGCAATTTAGAAGG
AAATCCCATAGATTGAAGCAAAGCATAAATAGGTGGCTCCATCTAAAAAG
AAGATATGCAAAGTCACATGCAAACAATGTAGACATAGGGAAAACATTTA
TTAGGTCTCTCAATACCATCAATGTACTGCAGTAGGTGTGTGGGGGACTG
TGCCCATAGCTGTAAGAAAAAGGGAATAAGGCATGACTAAATGTGACCAT
TGCTTGTTTTTCATAAATGAAATTCCTAAGGAAAACCCCTCCGCTTATTT
CGGTCCTGTAAATCTTGTTTGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_g09.b1 MSMg01no358_g09.b1 CHROMAT_FILE:
MSMg01no358_g09.b1 PHD_FILE: MSMg01no358_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:39 2005
         (567 letters)



>mm_chr10_86570888_86571852
          Length = 965

 Score =  998 bits (516), Expect = 0.0
 Identities = 538/546 (98%), Gaps = 2/546 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattccgatttcatgggtaggatgcaccagagatgtggagtgctttctttagctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattccgatttcatgggtaggatgcaccagagatgtggagtgctttctttagctt 264

                                                                       
Query: 65  caggagtgtcttaggtccatgaaaccatcattcctacagagtttcattgaaacttatcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caggagtgtcttaggtccatgaaaccatcattcctacagagtttcattgaaacttatcca 324

                                                                       
Query: 125 tcggagcctctctgtagcaatgctgtctgtcactagatttttaaactcacccctccccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcggagcctctctgtagcaatgctgtctgtcactagatttttaaactcacccctccccca 384

                                                                       
Query: 185 ccccggtgtgtgtgtgtggaaaggtgtatttcctcatatatgaaactctgcctgtgttat 244
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccggtgtgtgtgtg--gaaaggtgtatttcctcatatatgaaactctgcctgtgttat 442

                                                                       
Query: 245 atgctactcacccctcccgactccctgatatactaaaccttctggtttattcaagattct 304
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 443 atgctactcacccctcccgacttcctgatatactaaaccttctagtttattcaagattct 502

                                                                       
Query: 305 gatatattctgaatgtcttataagctcaacaggtcaacttgaaaatctatcggagtcaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gatatattctgaatgtcttataagctcaacaggtcaacttgaaaatctatcggagtcaga 562

                                                                       
Query: 365 aatacttttgaaccatctccatttcttttctacagaattctgtattagtttttataacca 424
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatactttttaaccatctccatttcttttctacagaattctgtattagtttttataacca 622

                                                                       
Query: 425 tacatgccccttaatgaatacaaattttagttagaacagaacagacatccagatgacatc 484
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 623 tacatgccccttaataaatacaaattttagttagaacagaacagacatccagatgacatt 682

                                                                       
Query: 485 ctaacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 683 ctaacacacacacacacacacacacacacacacacacacacacacacacactcacacaca 742

                 
Query: 545 cacaca 550
           ||||||
Sbjct: 743 cacaca 748


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 237
Number of extensions: 52
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 965
Length adjustment: 10
Effective length of query: 557
Effective length of database: 955
Effective search space:   531935
Effective search space used:   531935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no358_g09.g1 MSMg01no358_g09.g1 CHROMAT_FILE:
MSMg01no358_g09.g1 PHD_FILE: MSMg01no358_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:39 2005
         (506 letters)



>mm_chr10_86747138_86748046
          Length = 909

 Score =  663 bits (343), Expect = 0.0
 Identities = 354/359 (98%), Gaps = 3/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgttagtttagaggattcttgataacgattatcatgtagtagatgtgtgggttagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ctgtgttagtttagaggattcttgataacgattatcatgtagtagatgtgtgggttagct 300

                                                                       
Query: 61  tttactgcttaacaatctaacccaaattctatagcatgaaaaaaa---ctccattttctc 117
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 299 tttactgcttaacaatctaacccaaattctatagcatgaaaaaaactcctccattttctc 240

                                                                       
Query: 118 gtgatcctgatatttggcagttgaggtggggttcagcctggcagttctggtcttggctgg 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gtgatcctgatatttggcagttgaggtggggttcagcctggcagttctggtcttggctgg 180

                                                                       
Query: 178 tcccttctaggcatttgccaacagttgctgggataccttggctcccagcattcattgcac 237
           || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tctcttctaggcatctgccaacagttgctgggataccttggctcccagcattcattgcac 120

                                                                       
Query: 238 ttctccgtcctttgctgataaatgcaggcttgttcctctggaagagacatctaagagagc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ttctccgtcctttgctgataaatgcaggcttgttcctctggaagagacatctaagagagc 60

                                                                      
Query: 298 agatgggaagaaggcctcttgaagtctgggcctcataactggcacaagattacccctac 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  agatgggaagaaggcctcttgaagtctgggcctcataactggcacaagattacccctac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 909
Length adjustment: 10
Effective length of query: 496
Effective length of database: 899
Effective search space:   445904
Effective search space used:   445904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)