BAC Information

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BAC

Clone NameMSMg01-358L12
Chromosome10 (Build37)
Map Location 30,586,295 - 30,586,746
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
Downstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358L12.T7 (MSMg01no358_l12.b1)MSMg01-358L12.TJ (MSMg01no358_l12.g1)
ACCAG468308AG468309
length722724
length of high quality
(start - end)		512 (39 - 550)424 (67 - 490)
definitionCHROMAT_FILE: MSMg01no358_l12.b1 PHD_FILE: MSMg01no358_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:03 2005CHROMAT_FILE: MSMg01no358_l12.g1 PHD_FILE: MSMg01no358_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
ATAGACCCAAAATATCACTCAGAAACTCTTGCACCATCTGTGTTTTCTCA
CCGAGTTGGTCTGTGGGATGGAGAGTTTTACTTAAAGATGACCTTCACAA
CTTGACTGATTCATCATTCTGATTAATATGAGATTTTACCCCTTCTGCAG
ACTGTCTTGTCTTCCTCTACAGATCTCACAGAGGACATGGAAAAGTGGTC
AGGAATGCAGAGGAGCTCTGTGGCTTGGAAAGAGCCCAAGGTATTGTGGA
TAGCCCTGGGGCTAATTATATTTGATGTTAATTCCATTCTCCTGTGAGGA
GTTATGAACAAGGAATTAGTCAGCACTCAGGTGATTTCCTGTAAACCTGC
TTCCCACCTTAATTTGTAAAATAAAGGAGAGCTGATGATTGGGCAGATAA
AAGGGAAGGTAGAGCAGAAGGAGAGAGAANAAGAAAAGAAGGAGAAGATG
GAAGAGGGAGAGGAAGCAGAGGAGGAGGAAGAAGGAGAAAAGCGGAGCAG
AAACACATGGCCTGGAGAAACTGCAAGTCCTAAAGGGTGTCATAAGCTGG
GGCAGATGGTAATGTAACGGTAAATCTGCCCATCTAGGCCCTAACATGTA
ATCAAATAACCGGGGTGGGGTTTCTTTGCCCGGCCTATTTTGGATGAAAT
TTCTGCACAAATTTTTTTTGCC

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTGTGCTTATGTTCATAACAAAGATTAGTCTGTA
ATTCTTTGTTGTGTCTTTATGTGGTTTGTGTTATCAGGGTAACTGTGGCC
TCATAAAAAGAATTGGTTAACATTCTGTTTCTGCTGTGTGAGAACCTGAG
GATTACTGGGCTTCTGCACTGAAACCATCTGGCCGTGAGCCTTTTTGACT
GTAGACTTCTAACTACTGCTTCTATGTCACTAGGGGTTTGTTTAAATTGC
GTATTTGATCTTGATTTGACTTTGATTTGGTAGGTGGCATGTATTGAGAA
AATTATCCATTTTTTTTTAGATTTTCCAATTTGGTGGAATACAGACTTTT
AAAGCATGTCTTTATGATTCTCTGGATTTCCTCAGTGTCTGTTGCTATGG
CTTCACTTTGCTTTTTATAATCTCCCTTTAACTTTTTTAGTTAAGTTAGC
TACAAGTTTGTCAATATTTTCTCAAAAAACCAACTATTTCATTTCCTTGA
GTTCTTTTGTTTTGGTTGATTTTTTATCCCACTGATTGTCCATTCCTTTG
AATCTCCTCCCTTTTGTGGGCTATTTCTTCCTTTTCTAATTACTCCTCTT
CATAACTTTTTGGCAATGGTTGTTAACTTACACATAATTTTACCTCCCCC
ATTTTTTAATTCTACGTGCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_l12.b1 MSMg01no358_l12.b1 CHROMAT_FILE:
MSMg01no358_l12.b1 PHD_FILE: MSMg01no358_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:03 2005
         (512 letters)



>mm_chr10_30586295_30587206
          Length = 912

 Score =  752 bits (389), Expect = 0.0
 Identities = 437/453 (96%), Gaps = 2/453 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatatagacccaaaatatcactcagaaactcttgcaccatctgtgttttctcac 63
           |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 452 ggaattcatataaacccaaaatatcactcagaaactgttgcaccatctgtgttttctcac 393

                                                                       
Query: 64  cgagttggtctgtgggatggagagttttacttaaagatgaccttcacaacttgactgatt 123
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 392 cgaggtggtctgtgggatggagagttttacttaaagatgaccttcacaacttgacttatt 333

                                                                       
Query: 124 catcattctgattaatatgagattttaccccttctgcagactgtcttgtcttcctctaca 183
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 332 catcattctgattaataagagattttaccccttctgcagactgtcttgtcctcctctgca 273

                                                                       
Query: 184 gatctcacagaggacatggaaaagtggtcaggaatgcagaggagctctgtggcttggaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gatctcacagaggacatggaaaagtggtcaggaatgcagaggagctctgtggcttggaaa 213

                                                                       
Query: 244 gagcccaaggtattgtggatagccctggggctaattatatttgatgttaattccattctc 303
           |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 212 gagcacaagctattgtggatagccctggggctaattatatttgatattaattccattctc 153

                                                                       
Query: 304 ctgtgaggagttatgaacaaggaattagtcagcactcaggtgatttcctgtaaacctgct 363
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 152 ctgtgaggagttatgaacaaggaatgagtcagcactcaggtgatttcctgtaaacctgct 93

                                                                       
Query: 364 tcccaccttaatttgtaaaataaaggagagctgatgattgggcagataaaagggaaggta 423
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| 
Sbjct: 92  tcccaccttaatttgtaaaacaaaagagagctgatgattgggcagataaaagggaaggtg 33

                                            
Query: 424 gagcagaaggagagaga-anaagaaaagaagga 455
           ||||||||||||||||| | |||||||||||||
Sbjct: 32  gagcagaaggagagagaga-aagaaaagaagga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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