BAC Information

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BAC

Clone NameMSMg01-359A14
Chromosome10 (Build37)
Map Location 30,605,881 - 30,606,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
Downstream geneLOC654431, EG432448, Hddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359A14.T7 (MSMg01no359_a14.b1)MSMg01-359A14.TJ (MSMg01no359_a14.g1)
ACCAG468548AG468549
length748750
length of high quality
(start - end)
472 (30 - 501)487 (64 - 550)
definitionCHROMAT_FILE: MSMg01no359_a14.b1 PHD_FILE: MSMg01no359_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:27 2005CHROMAT_FILE: MSMg01no359_a14.g1 PHD_FILE: MSMg01no359_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTAGCT
CTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTC
TTGAGTTCTTTATATATATTGGATATTAGTCCCATATCTGATTTAAGATA
GGTAAAGATCCTTTCCCAATCTGTTGGTGACCTTTTTGTCTTATTGACAG
TGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCG
ATTCTCCATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTCC
CCCTGTGCCCATAACTTCGAGGATTTTCCCTACTTTCTCCTCTGTAAGTT
TCACTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCATTTAGATTTGACC
TTAGTACAAGGAGATAGGAATGGATCAATTCGCATTCTTCTACATGATAA
CCCCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACT
GGATGGGTTTAGCTCCCTTATCAAAGATTCAGTGACCATATGTGGGCGGC
TTCATCCCTGGGNCCTCACTTCCAATTCTTTGGGTCTATTTGTCCGTCTC
TATCCTTTCTTTTTTCCAACCCCAACTCCCCTTGTCAATCTTCTTCCCCG
TTTACTCATTCCCGCAACCCCCTATATTTCGCCCCCCACACCTTACATTA
TCTTATCTCTCTCCCACCATTCTTTTTCTTCCTTCCTCTCTCCCTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAATTTGCAGAGGAGTTTCTTCAAGTGCTTGATTGAAT
ACTTTTCAGAGCATTCACATGAGAAAACTATTCCAGGCTAGAGCGCCACT
GAAACCTTTGAGTAGAACAATTCAACAGTCCTTGGAGCTTATGCTGGCTA
GTTTTATTGAGCTTAACATAGGCTGCACTTATCTGAGAGGAAGAAACCTC
AACTGAGAAAATACCTCTAGAAGATCAGACTGTAAGTAGACAAGCATTTT
CTTAATTACTGATGTAAGTGGGAAGGATCAACTTATGGAGACACAGCTTG
ACTAGTGGTCCTGGGTGCTATAAGAAAGGAGGCTGAGCAAGCCATGAAGA
ACAAGCTGAAAGCAGTGCTCCTCTATGGTTGCTGCATCACCTCATGCCTC
CAGCTTCTTTCCCATTTTGAGTTTATGCCTTGGCTTCTCTAAATAAACTG
TGACTTGGTTTATGGACACCAAATAAACCCTTTCCTCTCCAAGCTCCTTT
GGTTAAAGTATTTCCTAAGAATAACATAAACGCCTACCTATAGCTTTTTA
CAGCCGGGAAAAAAGTTCCTGTTCTCTTTTATGACACCATTCAAACCTAT
TCCCGCACAAATACATAACCCCTTAATTAAATCCACCACTGGCATTTCAG
AATCTTGTCTTATTTGCTAATCCTCCCCTTATTTTAGCCCTGTACTCCTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_a14.g1 MSMg01no359_a14.g1 CHROMAT_FILE:
MSMg01no359_a14.g1 PHD_FILE: MSMg01no359_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:27 2005
         (487 letters)



>mm_chr10_30605681_30606567
          Length = 887

 Score =  919 bits (475), Expect = 0.0
 Identities = 484/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttgcagaggagtttcttcaagtgcttgattgaatacttttcagagcattcacatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgcagaggagtttcttcaagtgcttgattgaatacttttcagagcattcacatgag 260

                                                                       
Query: 61  aaaactattccaggctagagcgccactgaaacctttgagtagaacaattcaacagtcctt 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaactattccaggctagagcaccactgaaacctttgagtagaacaattcaacagtcctt 320

                                                                       
Query: 121 ggagcttatgctggctagttttattgagcttaacataggctgcacttatctgagaggaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ggagcttatgctggctagttttattgagcttaacataggctgcacttatctgagaggagg 380

                                                                       
Query: 181 aaacctcaactgagaaaatacctctagaagatcagactgtaagtagacaagcattttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacctcaactgagaaaatacctctagaagatcagactgtaagtagacaagcattttctt 440

                                                                       
Query: 241 aattactgatgtaagtgggaaggatcaacttatggagacacagcttgactagtggtcctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattactgatgtaagtgggaaggatcaacttatggagacacagcttgactagtggtcctg 500

                                                                       
Query: 301 ggtgctataagaaaggaggctgagcaagccatgaagaacaagctgaaagcagtgctcctc 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtgctataataaaggaggctgagcaagccatgaagaacaagctgaaagcagtgctcctc 560

                                                                       
Query: 361 tatggttgctgcatcacctcatgcctccagcttctttcccattttgagtttatgccttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggttgctgcatcacctcatgcctccagcttctttcccattttgagtttatgccttgg 620

                                                                       
Query: 421 cttctctaaataaactgtgacttggtttatggacaccaaataaaccctttcctctccaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttctctaaataaactgtgacttggtttatggacaccaaataaaccctttcctctccaag 680

                  
Query: 481 ctccttt 487
           |||||||
Sbjct: 681 ctccttt 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)