BAC Information

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BAC

Clone NameMSMg01-359B06
Chromosome10 (Build37)
Map Location 107,406,472 - 107,406,887
singlet/doubletsinglet
Overlap genenone
Upstream gene8430416H19Rik, Lin7a, Myf5, Myf6, Ptprq, EG628870
Downstream genePpp1r12a, Pawr, EG667814, Syt1, EG368203
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359B06.T7 (MSMg01no359_b06.b1)MSMg01-359B06.TJ (MSMg01no359_b06.g1)
ACCAG468580AG468581
length731775
length of high quality
(start - end)
418 (29 - 446)278 (59 - 336)
definitionCHROMAT_FILE: MSMg01no359_b06.b1 PHD_FILE: MSMg01no359_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:30 2005CHROMAT_FILE: MSMg01no359_b06.g1 PHD_FILE: MSMg01no359_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTGCCTGACTT
CCCTGGATGATGAATTAAACTGTAAGATGAAATAGACCCTTTGCTTTTCA
AGTTGCTCTTGGTCATAATGTTTTATCATAGCAATAGAAAGGTAGCTAAG
ACATAGATGGATAATAATGAAAAAATATTTTATATGTAACATATTATTCT
TTTATAAAGAAGAATGATGTTTTGTTTGGCGGAAAATGAATAGAATCAAG
GATCATCTTACAAAGTCAAGCATTGCACATTTCTCCCAAATTGTGGACTC
CAAAGGCAAGGAGAATGTGAATGTAAATGAAGGTGTTATGATGGACGTGA
AGTGGAAAGGAGGAATAAGGAAAGCTAATAAAGGGGGTGAAATGACCAAC
CAACACTGTGCAAGTAGAGAAATGCTGCAGTGAAACCCCCACTTTGTCTA
GTTACTCAGGGTTGAAATGTTGATCATAATGCCAGGAAGAATTATTTTTT
AAGGTCAGTATTTTTCCTTAACCAGGCCCCGAGGCTGTTTTCTCCACACC
GCCATTTTCAACCCCCGGGTGGGGGGTTTAGATTTGGTTTTTTTTCCAAA
ATTACTCAAAGACCTCTGGGTATGTTACCTCCACTTTCGCCCCGCGGGTT
CTCCCCCGGGGGCCGGAGCCCCTCCCCCTTTTTTTTGGTAGCGTGTTTTT
GTACCCCCCCCCTCTTTGTCATTATCCCGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACTATGTAAACCAGTTTGGCCTTAGATTTACAGAGTTCTGCC
TGCTCCTGGGTGCTAGGATTAAAATGCATGAACCGCATTAATTTTTGATG
TGACTGTTAATGTTAATTCTTCATTTCTTTTCAGATATTGCATTGCTTGT
GTAGAGAAGGACAGTTGATTTTCATGTTAATCTTAATATTCTTTAACTTT
GATAGGATTTATTACTTAATGGACACCATAGATGGATGGATGGATAGATA
GATAGATAGATAGATAGATAGATAGATAGATAGATNGTTNTTTTTTTTGT
TTAATTTTAAATTTTTATGTTTAGTATTTGTATATTCCTCTTTTTCCACC
TCCCCTTCTCCCTCTTCTTTTTCTCCTCTTCCCACCTTTCCCCCTCCTTT
TTTTTTTCTTTCCCCTTTTTTTCCCTCCCCCCCCCCCCTCCCCCTTTATT
CTTACCTTATCCTTCCCCTTCCTATTCTTTTTTTCCCTCTTTCTTCTCCC
TTTCCTTCTCGTTTCACCTTTTTTTTTCCCCTCCTCCCTTTTTTTTTTAT
TTCCTTTCCTATTCGATACTTTTTTTTTTTTAAATACCCCTATCTTCACC
CTTTCTTTTTCATTCCTTTATATTTCTCCCATTTCCTTTTGTTTTCTCCT
TTTCCCTTTCTCCGCCCTTTCTTTTTTTTTTCCCCCTCCTTTTTTCCTTC
TTCGCCCCTCTTTTTTTCCTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_b06.b1 MSMg01no359_b06.b1 CHROMAT_FILE:
MSMg01no359_b06.b1 PHD_FILE: MSMg01no359_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:30 2005
         (418 letters)



>mm_chr10_107406147_107406964
          Length = 818

 Score =  762 bits (394), Expect = 0.0
 Identities = 410/416 (98%), Gaps = 2/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgcctgacttccctggatgatgaatt--aaactgtaagatgaaatagaccct 62
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 741 gaattccttgcctgacttccctggatgatgaattacaaactgtaagatgaaatagaccct 682

                                                                       
Query: 63  ttgcttttcaagttgctcttggtcataatgttttatcatagcaatagaaaggtagctaag 122
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 ttgcttttcaagttgctcttggtcataatgtcttatcatagcaatagaaaggtagctaag 622

                                                                       
Query: 123 acatagatggataataatgaaaaaatattttatatgtaacatattattcttttataaaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatagatggataataatgaaaaaatattttatatgtaacatattattcttttataaaga 562

                                                                       
Query: 183 agaatgatgttttgtttggcggaaaatgaatagaatcaaggatcatcttacaaagtcaag 242
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 561 agaatgatgttttgtttggaggaaaatgaatagaatcaaggaccatcttacaaagtcaag 502

                                                                       
Query: 243 cattgcacatttctcccaaattgtggactccaaaggcaaggagaatgtgaatgtaaatga 302
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 cattgcacatttctcccaaattgtggactccaaaggcaaggggaatgtgaatgtaaatga 442

                                                                       
Query: 303 aggtgttatgatggacgtgaagtggaaaggaggaataaggaaagctaataaagggggtga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggtgttatgatggacgtgaagtggaaaggaggaataaggaaagctaataaagggggtga 382

                                                                   
Query: 363 aatgaccaaccaacactgtgcaagtagagaaatgctgcagtgaaacccccactttg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgaccaaccaacactgtgcaagtagagaaatgctgcagtgaaacccccactttg 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)