Query= MSMg01no359_i19.b1 MSMg01no359_i19.b1 CHROMAT_FILE:
MSMg01no359_i19.b1 PHD_FILE: MSMg01no359_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:04 2005
(518 letters)
>mm_chr10_107368863_107369780
Length = 918
Score = 946 bits (489), Expect = 0.0
Identities = 507/517 (98%), Gaps = 8/517 (1%)
Strand = Plus / Minus
Query: 1 ggagtgctgccctcttttggttatgacagccaagagtcccgaccaccaaatacggaatag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ggagtgctgccctcttttggttatgacagccaagagtcccgaccaccaaatacggaatag 819
Query: 61 aaccgggtgactcatcttttcctttcactcagagccctcatggaaacaaacaaggcaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 aaccgggtgactcatcttttcctttcactcagagccctcatggaaacaaacaaggcaggg 759
Query: 121 tgaaataattccactctctctctctctctctctctctctctctctctctttttttcatct 180
||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 758 tgaaataattccactctctctctctctctctctctctct-------t-tttttttcatct 707
Query: 181 taactgacttcaaagattatttgtttagggagatacaaggaagataaaaatctgtatagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 taactgacttcaaagattatttgtttagggagatacaaggaagataaaaatctgtatagg 647
Query: 241 aaacagaactttcatatagtaagcataaactccaggaaagccaaggattcctttgaccac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 aaacagaactttcatatagtaagcataaactccaggaaagccaaggattcctttgaccac 587
Query: 301 atccagcgagctaggaatcctcagatgaccacagacttttatgtataaggtaggggctgc 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 586 atccagcgagctaggaatcctcagatgatcacagacttttatgtataaggtaggggctgc 527
Query: 361 tcagagcaaacgtcctaaagtcccttttagattaagaacaagttcctgattcagagactg 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcagagcaaacgtcctaaaggcccttttagattaagaacaagttcctgattcagagactg 467
Query: 421 ccgaggcaagggcagggttatttttcatactgccattaagcatcggcacaaatgaatact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 ccgaggcaagggcagggttatttttcatactgccattaagcatcggcacaaatgaatact 407
Query: 481 agagaacttagaaggtaaaaagtcgccttctttagac 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 406 agagaacttagaaggtaaaaagtcgccttctttagac 370
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_i19.g1 MSMg01no359_i19.g1 CHROMAT_FILE:
MSMg01no359_i19.g1 PHD_FILE: MSMg01no359_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:04 2005
(465 letters)
>mm_chr10_107160645_107161509
Length = 865
Score = 799 bits (413), Expect = 0.0
Identities = 452/465 (97%)
Strand = Plus / Plus
Query: 1 agcaccaaagaggatgatctatctttctcctttcaagtttagggtcctcatttaagctta 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agcaccaaagaggatgatctatctttctcctttcaagtttagggtcctcaattaagctta 260
Query: 61 agagactcaatctgaatatgtcttatagtaagctgtcatatatttattaagttccttcaa 120
|| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 261 agggactcaatctgaatatgtcttataacaagctgtcatatatttatcaagttccttcaa 320
Query: 121 tacccacagggcttggccttaaattatcttatcaattccctcctcagaagacttgccata 180
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacccacagggcttggacttgaattatcttatcaattccctcctcagaagacttgccata 380
Query: 181 aaaccccaaccacacaaaggagttgatcatgatgatgtaagaaaaaggtagcaagaggta 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aaaccccaaccacacaaaggagttgatcatgataatgtaagaaaaaggtagcaagaggta 440
Query: 241 ataaaggtgaagctaaaactgggcggctctgaaagaacaggaagtagaaaggacagtggg 300
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 441 ataaaggtgaagctaaaactggacggctctgaaagaacagaaagtagaaaggacagtggg 500
Query: 301 aacaatgatccacagggccccccagctaatccacacacgttcctaaggagagagccacat 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacaatgacccacagggccccccagctaatccacacacgttcctaaggagagagccacat 560
Query: 361 atggacattattaaacacatgccactcaaaacagtctccatgtcataaccatattaaagc 420
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 561 atggacattattaaacacatgccgctcaaaccagtctccatgtcataaccatattaaagc 620
Query: 421 ccaacaacagagagttgcaaaaatgcacagctagaacacaaaaga 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaacaacagagagttgcaaaaatgcacagctagaacacaaaaga 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
