BAC Information

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BAC

Clone NameMSMg01-359J12
Chromosome10 (Build37)
Map Location 96,442,637 - 96,586,717
singlet/doubletdoublet
Overlap gene4930556N09Rik
Upstream geneEea1, EG432491, LOC667380, Btg1, LOC628256
Downstream geneEG667407, Dcn, Lum, Kera, Epyc, 4921510H08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359J12.T7 (MSMg01no359_j12.b1)MSMg01-359J12.TJ (MSMg01no359_j12.g1)
ACCAG468972AG468973
length758783
length of high quality
(start - end)		463 (29 - 491)260 (58 - 317)
definitionCHROMAT_FILE: MSMg01no359_j12.b1 PHD_FILE: MSMg01no359_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:07 2005CHROMAT_FILE: MSMg01no359_j12.g1 PHD_FILE: MSMg01no359_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,442,637 - 96,443,095)(96,586,458 - 96,586,717)
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGCAGGGCAGG
AACCTGGAGGTACAAACTGAAGCAGGGACCATGGAAAGCCATTGCTTATT
GACTTGCTCTTTCTCAACTCCTTTTTAATCATAGAGCCCAGGCCCACCTG
TCTAAGGATGTTACCACCAATAGTAGTGTGGGCACACCTTCATCAATCAG
CCATCAAGAAAATATCCCATAGACATGCTTAAAGGTCAAATAGATGAGGG
CAATTTCTAAATTAAAGTTCTTCCCAGTTATCCTGGCCTATATTAAGTTG
GCAGAAACATACTACAACACAACACAATACAACACACATGCACACAATGA
AAAGCTGTGCATTTTCATGGTATTCTTTTGTAGTTGAAAACAGTTCCGTG
GTTTTTGTACTGTTCTTTTTTTCTTTTGGTATCTTATTACTTATTCCTAG
AGAAGCAAAAAGATTTAGAATTATGCTGCCACTAAGTTCTCCCAGAATCA
TCGTNCATGTGANAGNTATTATTATTATTAATTATAATATTACTATCATT
ATTTACCCCCCCCCCCCCCCCCNCCCCCCTTTTTTCCTTCATTTCTCTTT
TCCTTTTTTTCTCCTTTAAATTATTATCTCCCCCCCCTCCCCTTTTTCTT
TTTTACTTTCCCTCCCCCTTTTTCCTCTCTTTTTTCTTCCCTCTCTTCCA
CTTTTCTCTTTATTCCTTCTTTTTTTACACCTTCTTTTCTTCTTCTCTTT
ACCTCTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXACTGAAATATGCTCACTATGTAAGTAGTACCTCTATGTCTAGA
TGTGGCTTTGCATGACTACCAAGAGGTATATTCCTGAGCAAGGACATGAT
ATTAGGAGAGGTTTGCCACATGTTTTTGTTGGTAAGTTTTTTTTCTGTCT
AGGATTACTGAATAAATCAGTTCTATGAGCAGTTAGCAGCATAGCTCTTA
GTCTTCTAGTGTGTATTGAAATATGAAATTTATATGTGCCCCCTGATAGT
GTCAGTTGGTATTTAAGTCTTATACTACAGATTTTATCATTAATGTGCAT
CAGCCATTACTGTCTTCTTCATACTGCTACAAGTGTTATCCATCTTCCAC
ATACCGAATGTCACTTTCTTTCAACCCCGTCTCCACTTCTCCCGCCCTTA
TTTTAATTCCTTTGCCTGTTTTCCTTCTTCCTCCCCCGCTTCCCCTTTCC
CTTTCCATTATCCTTCCCCTCTCCCTTCTTTTTTTTCCCTCTTCTTTTCT
CCTTTCTTTCTCTTTCTTCCTCTTTATTCTCCCTCCCCTTCTTTTTTTTT
TCCCCTTCCTCTTTCCTCTTCTTTCTTTTTTTTTCCTTCCCCTTTTCTCC
CCTTTCTTTTTTCTTCCCTTTTCTTCCTTTCCCTCTCTCAATTTTTTCTT
TCTTTCCCCTTTTCTCCCTTTTTTTTTTTCCTTTTTCCCCCCCTTTTTTT
CCCTTCTCCCCTCTCTCTTTTTTTTCCCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_j12.b1 MSMg01no359_j12.b1 CHROMAT_FILE:
MSMg01no359_j12.b1 PHD_FILE: MSMg01no359_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:07 2005
         (463 letters)



>mm_chr10_96442433_96443295
          Length = 863

 Score =  864 bits (447), Expect = 0.0
 Identities = 456/459 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagcagggcaggaacctggaggtacaaactgaagcagggaccatggaaagccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagcagggcaggaacctggaggtacaaactgaagcagggaccatggaaagccat 264

                                                                       
Query: 65  tgcttattgacttgctctttctcaactcctttttaatcatagagcccaggcccacctgtc 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 tgcttattgacttgctctttctcaactcctttttaatcatagagcccatgcccacctgtc 324

                                                                       
Query: 125 taaggatgttaccaccaatagtagtgtgggcacaccttcatcaatcagccatcaagaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaggatgttaccaccaatagtagtgtgggcacaccttcatcaatcagccatcaagaaaa 384

                                                                       
Query: 185 tatcccatagacatgcttaaaggtcaaatagatgagggcaatttctaaattaaagttctt 244
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatcccatagacatgcttaaagatcaaatagatgagggcaatttctaaattaaagttctt 444

                                                                       
Query: 245 cccagttatcctggcctatattaagttggcagaaacatactacaacacaacacaatacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccagttatcctggcctatattaagttggcagaaacatactacaacacaacacaatacaa 504

                                                                       
Query: 305 cacacatgcacacaatgaaaagctgtgcattttcatggtattcttttgtagttgaaaaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacacatgcacacaatgaaaagctgtgcattttcatggtattcttttgtagttgaaaaca 564

                                                                       
Query: 365 gttccgtggtttttgtactgttctttttttcttttggtatcttattacttattcctagag 424
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 565 gttccgtggtttttgtactgttctttttttcttttgttatcttattacttattcctagag 624

                                                  
Query: 425 aagcaaaaagatttagaattatgctgccactaagttctc 463
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagcaaaaagatttagaattatgctgccactaagttctc 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_j12.g1 MSMg01no359_j12.g1 CHROMAT_FILE:
MSMg01no359_j12.g1 PHD_FILE: MSMg01no359_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:07 2005
         (260 letters)



>mm_chr10_96586258_96586917
          Length = 660

 Score =  487 bits (252), Expect = e-142
 Identities = 258/260 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgaaatatgctcactatgtaagtagtacctctatgtctagatgtggctttgcatgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 actgaaatatgctcactatgtaagtagtacctctatgtctagatgtggctttgcatgact 401

                                                                       
Query: 61  accaagaggtatattcctgagcaaggacatgatattaggagaggtttgccacatgttttt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 accaagaggtatatttctgagcaaggacatgatattaggagaggtttgccacatgttttt 341

                                                                       
Query: 121 gttggtaagttttttttctgtctaggattactgaataaatcagttctatgagcagttagc 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gttggtgagttttttttctgtctaggattactgaataaatcagttctatgagcagttagc 281

                                                                       
Query: 181 agcatagctcttagtcttctagtgtgtattgaaatatgaaatttatatgtgccccctgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agcatagctcttagtcttctagtgtgtattgaaatatgaaatttatatgtgccccctgat 221

                               
Query: 241 agtgtcagttggtatttaag 260
           ||||||||||||||||||||
Sbjct: 220 agtgtcagttggtatttaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space:   163401
Effective search space used:   163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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