BAC Information

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BAC

Clone NameMSMg01-360C03
Chromosome10 (Build37)
Map Location 105,016,504 - 105,158,979
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042383, Tmtc2, EG627573
Downstream geneBC067068, Ccdc59, EG667758, EG639162, Ppfia2, Olfr1556-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360C03.T7 (MSMg01no360_c03.b1)MSMg01-360C03.TJ (MSMg01no360_c03.g1)
ACCAG469382AG469383
length757747
length of high quality
(start - end)
393 (47 - 439)496 (78 - 573)
definitionCHROMAT_FILE: MSMg01no360_c03.b1 PHD_FILE: MSMg01no360_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:48 2005CHROMAT_FILE: MSMg01no360_c03.g1 PHD_FILE: MSMg01no360_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,158,623 - 105,158,979)(105,016,504 - 105,016,992)
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAACTTGTGAGCGTTGAGGGAGGAGGATGAGATTAAACACAACC
CTGGCTATGGGGAAAATTCAAAGCCAGCCAGGGCTACATATGATTATATT
TCAGAGACAGAGGTAGATGCAGAGGCAGAGGAAGAGACAGAAACAGAAAT
AGAGAAACAGAGAGAGACAGAGAGTCAAGGGGGTCCGGGTGGGGGGGAGA
GGGATGGGGGAACAATAACAACAGCAACAACAACAACAAACAGGTTGATG
GTTGACATGGCAGTAAGTTTCCTGTGTAGCCCTGGGGCCTAGGCATATTA
AATGTGTCAGTGGAGAAAACAGCAGTGGTCCCTCTCCAGGGGTAGATATG
CTCTTCTGTCAGTACTACTTTTTTTTTTCCCCTTACTCACGTTTATTTCA
ATCATCTCAACCTTAGGAACACCGGGCCCACTCTGGACAATGGACTTAAC
CTAGTCTCCTCTGTCACTTCTTCCAATATGGCAGGTATTATCCCACACCT
TTCTCCTAGGACATCCTTGTATTTGTTGTCCTTTGAGTTGTCTTTACACC
CCTCCCCTTCTCTTGACCCCCTTGTTTATTTCTTCCCCCCTTCCTCTCAC
CCCTGCCTCCAATCGTTCCCCCAAAATCACAATCTCGCCGCTCCTCCCTG
TACCTTTGGTTTCCGGTTTTACTAACCTCCCTTTTTTTTGCCCCTCCCCC
CCCCTTT
CGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTACGTGCCTTATCAGGAT
TCACATGAAAGCCAGTTGCCAGCATTCTCCCTCTGGTCAAAGCTTTGTCA
TGAGTCATTTCCTCTGATCTCTGATCTTCAGAGCTTCAGCCCAACTTGCC
TTTATTTATAAAACAACATCCACCTTCTGAGTATTTTTAGTTATTAGATA
TTATCCTGAGCGCCTTCTGTTTATTATCTCACTAATCTGAGAGAGCTAAA
TAAAGAAGTAGAGGCACACATGGGTTTAGTCAACAGCCCATGGTCTTGTA
GCCTCTAAGTAGTGACACTAATATTTGTAAGTCACAAAGTCTCTGTTTTG
GTCATTCCTCAATAGAGTCTTGATACCCATTCTCCCGTTCAGGAGTCACA
CTTTTCTTAGCATCAAGGGAAGGAACTACAGATAGCCATGATGCTCTAAG
TATATTTAATGTTCTACCTCTCCTACATTTCCACAGCTCTTTTTGGATAA
ATTACTGTGAATATTTTTATTTTTGTGAATGTCATTTTTAAAGCCCCTTT
TGTCTCACTCCTTCCCCATCTAATGCCTAAACTTTTAAAAGACTCTACCT
AATCCCAGATACTATGCTATCTATAACAGGATTATATGTTATCCCATGGA
TAAAAAATTCCAGATTTTTCACCCAAGATGTATTTTAACCAATCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_c03.b1 MSMg01no360_c03.b1 CHROMAT_FILE:
MSMg01no360_c03.b1 PHD_FILE: MSMg01no360_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:48 2005
         (393 letters)



>mm_chr10_105158187_105158979
          Length = 793

 Score =  667 bits (345), Expect = 0.0
 Identities = 355/359 (98%), Gaps = 2/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 31  aggaggatgagattaaacacaaccctggctatggggaaaattcaaagccagccagggcta 90
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 aggaggatgagattaaacacaaccctggctatggggaaaattcaaagccagccagggcta 734

                                                                       
Query: 91  catatgattatatttcagagacagaggtagatgcagaggcagaggaagagacagaaacag 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 catatgattatatttcagagacagaggtagatgcagaggcagaggaagagacagaaacag 674

                                                                       
Query: 151 aaatagagaaacagagagagacagagagtcaagggggtccgggtgggggggagagggatg 210
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 673 aaatagagaaacagggagagacagagagtcaagggggtctgggtgggggggagagggatg 614

                                                                       
Query: 211 ggggaacaataacaacagcaacaacaacaacaaacaggttgatggttgacatggcagtaa 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggggaacaataacaacagcaacaacaacaacaaacaggttgatggttgacatggcagtaa 554

                                                                       
Query: 271 gtttcctgtgtagccctggggcctaggcatattaaatgtgtcagtggagaaaacagcagt 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gtttcctgtgtagccctggggcctaggcatattaaatgtgtcagtggagaaaacagcagt 494

                                                                      
Query: 331 ggtccctctccaggggtagatatgctcttctgtcagtactacttttttttttcccctta 389
           ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 493 ggtccctctccaggggtagatatgctcttctgtcagtactac--ttttttttcccctta 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no360_c03.g1 MSMg01no360_c03.g1 CHROMAT_FILE:
MSMg01no360_c03.g1 PHD_FILE: MSMg01no360_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:48 2005
         (496 letters)



>mm_chr10_105016297_105017192
          Length = 896

 Score =  905 bits (468), Expect = 0.0
 Identities = 486/496 (97%), Gaps = 7/496 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcctacgtgccttatcaggattcacatgaaagccagttgccagcattctccctctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tctcctacgtgccttatcaggattcacatgaaagccagttgccagcattctccctctggt 267

                                                                       
Query: 61  caaagctttgtcatgagtcatttcctctgatctctgatcttcagagcttcagcccaactt 120
           |||||||||||||||||||||||||||||||||       ||||||||||||||||||||
Sbjct: 268 caaagctttgtcatgagtcatttcctctgatct-------tcagagcttcagcccaactt 320

                                                                       
Query: 121 gcctttatttataaaacaacatccaccttctgagtatttttagttattagatattatcct 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctttatttataaaacaacttccaccttctgagtatttttagttattagatattatcct 380

                                                                       
Query: 181 gagcgccttctgtttattatctcactaatctgagagagctaaataaagaagtagaggcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcgccttctgtttattatctcactaatctgagagagctaaataaagaagtagaggcac 440

                                                                       
Query: 241 acatgggtttagtcaacagcccatggtcttgtagcctctaagtagtgacactaatatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgggtttagtcaacagcccatggtcttgtagcctctaagtagtgacactaatatttg 500

                                                                       
Query: 301 taagtcacaaagtctctgttttggtcattcctcaatagagtcttgatacccattctcccg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagtcacaaagtctctgttttggtcattcctcaatagagtcttgatacccattctcccg 560

                                                                       
Query: 361 ttcaggagtcacacttttcttagcatcaagggaaggaactacagatagccatgatgctct 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 ttcaggagtcacacttttcttagcatcaagggaaggaactacagatagccatgatgcttt 620

                                                                       
Query: 421 aagtatatttaatgttctacctctcctacatttccacagctctttttggataaattactg 480
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 621 aagtatatttaatgttctacctctcctacatttccacagttctttttggataaattactg 680

                           
Query: 481 tgaatatttttatttt 496
           ||||||||||||||||
Sbjct: 681 tgaatatttttatttt 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)