BAC Information

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BAC

Clone NameMSMg01-360C07
Chromosome10 (Build37)
Map Location 124,236,576 - 124,236,807
singlet/doubletsinglet
Overlap genenone
Upstream gene4930503E24Rik
Downstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360C07.T7 (MSMg01no360_c07.b1)MSMg01-360C07.TJ (MSMg01no360_c07.g1)
ACCAG469390AG469391
length745740
length of high quality
(start - end)
232 (73 - 304)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no360_c07.b1 PHD_FILE: MSMg01no360_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:49 2005CHROMAT_FILE: MSMg01no360_c07.g1 PHD_FILE: MSMg01no360_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTCCTGTCTCTCTTTGGTGTTGAACAGCAGTGTAGAAGTGTAA
GCTGAATAAACCCTTTCCTCCCCAGCTTGTTCTTGGTCTTGATGTTTGTG
CAGGAATAGAAATGCTAACTAAGACATTTCTCTTAGTGTTGGAGACTTGC
CATCCCAATGTTCCACTAGAATCCAGTTGGTCAATTAGAAAATCTACTTC
CTTATAACCAGGAAGTTTTCTTCTGTCAGACACCAGGAGTGGTGCTGAAT
ACCATAGACCTGCGATTTGTTTTTTGTAGTCAGGAGAATTACTGCCAGTT
TGAGACCAGCTGGCACATTAGTTACAACCTATCTCATAAACCATATAGGC
AGACATAGCTGGCAAGGTAGCATAATTAATAGAATATTCATCCAGAAAGC
CCAAATCCTTACCCTTGTTACCAGCACCAGGAATACAGGAGATAATACAG
ATGAACTACTGTCTGAAAAATGTCTTATGTTCCTTGTTCACCATTCATCA
CACTGGATAGATCGTCTCATTGTTAAGACTCCGCTTCGTGGTGCCTGTAT
CAAGTATGTGTACCCATATTTTTTGTTTTTCGACCCTTTCCCTCTATTAT
AGCTTCTATCTGTCTCACGTTTCATGGCTTGATGTCCTCCATTATTTGTG
TGAAAGGCTTTTATTTGCCGCCGTTTTTCCTTTACTCACAACCTT
AATGCTGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATATAATGAGATTTCAGAGGGGAACA
TGGGCCATACTATGAACCGGGAGAGAAGTCACTTTTATTGCTATTTACAT
CTATGTGCTAAAATTTTTCTGAGACTCAATTCTAATGTAATGAAATATGT
TGTTCTGTTGGAAAATTCTCATGGCACCATCGCATACAGGCTGTGACATA
GACAGACATATGTGAATATGTGTATTTTGGCTTTAAATGAACTCAGAGAA
ATTTTAAGATTTCAGACATCTCTGACCTGTAACCAGTTGTAGGTTTCAGA
GACTTTAGTGGCCAAGGAAACCTACGTTGAGCTTTGTCCTGGGACCATAG
CAGAGATACCCCAAAGACAGTGGTCCACTTATCAAAGGACTCAGCTTGTG
AAAATGCAAATTCACCTGACAGGAGTGTGTCTGGATTGAATTCCTTCCTC
AAAACCAACCACATAGAAAATTTCTTTCTCATGTTAACTACCAAAGCATA
TAGATGACTACTGAGTTAGAATAGGCCCAGAAGCTGTGTAAAGCTAACAG
TATTATCATTTTCATGGCTCTGGGTTTGCAGGCATGCATAATGCCAGAGT
TCCATAATACTGGAGACTCTCAAAAAATCTAGAAACATATTGAAACTATC
AAAGTGCCCTGTTTCATTTCCATTACTTACTGGTCTGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_c07.b1 MSMg01no360_c07.b1 CHROMAT_FILE:
MSMg01no360_c07.b1 PHD_FILE: MSMg01no360_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:49 2005
         (232 letters)



>mm_chr10_124236376_124237007
          Length = 632

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgttgaacagcagtgtagaagtgtaagctgaataaaccctttcctccccagcttgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgttgaacagcagtgtagaagtgtaagctgaataaaccctttcctccccagcttgttc 260

                                                                       
Query: 61  ttggtcttgatgtttgtgcaggaatagaaatgctaactaagacatttctcttagtgttgg 120
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 261 ttggtcttgatgtttgtgcaggaatagaaaacctaactaagacatttctcttagtgttgg 320

                                                                       
Query: 121 agacttgccatcccaatgttccactagaatccagttggtcaattagaaaatctacttcct 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacttgccatcccaatgttcgactagaatccagttggtcaattagaaaatctacttcct 380

                                                               
Query: 181 tataaccaggaagttttcttctgtcagacaccaggagtggtgctgaatacca 232
           || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaccaggaagttttcttctgtcagacaccaggagtggtgctgaatacca 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)