BAC Information

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BAC

Clone NameMSMg01-360L10
Chromosome10 (Build37)
Map Location 123,611,479 - 123,611,999
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp15, LOC100042958, AI851790
Downstream gene4930503E24Rik, LOC671416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360L10.T7 (MSMg01no360_l10.b1)MSMg01-360L10.TJ (MSMg01no360_l10.g1)
ACCAG469823AG469824
length779775
length of high quality
(start - end)		525 (46 - 570)419 (76 - 494)
definitionCHROMAT_FILE: MSMg01no360_l10.b1 PHD_FILE: MSMg01no360_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:32 2005CHROMAT_FILE: MSMg01no360_l10.g1 PHD_FILE: MSMg01no360_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAAACATTACCATGGGGCTTGAGACTATCTCAAACATTACAAGA
GCTATTGTTTTTAAGAAAACTCCAGCTTGGTCCCCAGTATCCATGTTAGG
TGGTTCACAACCCCATGTAACACCAGCTCCAGTGGACACTCTTCTGGGCT
CCATGGGTACACATACACATTTAGTATATACACACAGGCATAGACATAAA
TAAATAAATTTAAACATAAGTATTTTCAAATTTATAAGGTGTCTGAAAAA
TATACACAATGAACCATATATAATAATATATTTTGGCTGTCATTTAGTTT
GTTTTGTATCATCTTATTATTTTGGATAGTTTGATTAGTCTTTCCCATTT
GATCATATTTGTATTTTATGTTAAATTTGTAACTTTAATACTTCTAAATT
TCTTAAGGTTTAAAATTGTACCTTACTCATTTTTATTGTTTGTTTTTATT
ATAAATTAATGTTTTATTCATTTTTACTTTAAATTTCCCTTGGCCTCTCT
CCCTCCCTCCCCTCTCATTTTTCACTATTGCTATAANTCTGGNCCCACTT
TCAAGGAAACAGCCTTGAGTTTTTATAAATGATTGATCACCTAGTACCCA
ATTTGCCCTATTCCGGCGAAACCCTCTGGTGGGGTTTTTTTACAACTGAA
TTTCTTTTCCTGGGCTTTAATTATTGTTTGTGGGCGTTTTCCCCCCCCCC
CAGGGGAATATCTACAAAATAATAACCCC

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGAAGAATGAAGACCAAAGTGTGG
ACACTTTACCCTTTCTTAGAAATGGGAACAAAACACCCATGGAAGGAGTT
ACAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATT
GCCATATGCAGGGATCCATCCCATAATCAGCTTCCAAATGCTGATCCCAT
TGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTCTCTCT
TGTGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGATGATCACAGTC
AGCTATTGGATGGGTCACATGGCCCCAATGGAGGAGCTAGAGAAATTACC
CAAGGAGCTAAATGGAACTGCAACCCTATATGTGGAACAACAATATGAAC
TAACCAGTATCCCGGAGCTCTTGTCTTTAGCTGCATATGTATCANAAGAT
GGCCTAGTTGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACCT
TATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAAGGGGAGTGTTTG
GGTTAGTGGATTTCTNTTTTTTTTCCCTTTTTTCCCATTTTTCCATTTTT
CNTTTTCTTTTCTCCCTCCTCCCTAATTTTTATTTTTCTCTCAACATTTC
TCCTCTTATCCTTCCCTTCCCACTTTTTCCCTTTTCATTTCTCTCCTTTT
TTACATCTATTTTTCTCCTTTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_l10.b1 MSMg01no360_l10.b1 CHROMAT_FILE:
MSMg01no360_l10.b1 PHD_FILE: MSMg01no360_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:32 2005
         (525 letters)



>mm_chr10_123611144_123612068
          Length = 925

 Score =  953 bits (493), Expect = 0.0
 Identities = 514/521 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaaacattaccatggggcttgagactatctcaaacattacaagagctattgtt 64
           ||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 856 gaattcttaaacattatgatggggcttgagactatctcaaacattacaagagctcttgtt 797

                                                                       
Query: 65  tttaagaaaactccagcttggtccccagtatccatgttaggtggttcacaaccccatgta 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 796 tttaagaaaactccagcttggtccccagtatccatgttagatggttcacaaccccatgta 737

                                                                       
Query: 125 acaccagctccagtggacactcttctgggctccatgggtacacatacacatttagtatat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 acaccagctccagtggacactcttctgggctccatgggtacacatacacatttagtatat 677

                                                                       
Query: 185 acacacaggcatagacataaataaataaatttaaacataagtattttcaaatttataagg 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 676 acacacaggcatagacataaataaacaaatttaaacataagtattttcaaatttataagg 617

                                                                       
Query: 245 tgtctgaaaaatatacacaatgaaccatatataataatatattttggctgtcatttagtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtctgaaaaatatacacaatgaaccatatataataatatattttggctgtcatttagtt 557

                                                                       
Query: 305 tgttttgtatcatcttattattttggatagtttgattagtctttcccatttgatcatatt 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 556 tgttttgtatcatcttattattttggatagtttgattagtctttcccatttggtcatatt 497

                                                                       
Query: 365 tgtattttatgttaaatttgtaactttaatacttctaaatttcttaaggtttaaaattgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tgtattttatgttaaatttgtaactttaatacttctaaatttcttaaggtttaaaattgt 437

                                                                       
Query: 425 accttactcatttttattgtttgtttttattataaattaatgttttattcatttttactt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 accttactcatttttattgtttgtttttattataaattaatgttttattcatttttactt 377

                                                    
Query: 485 taaatttcccttggcctctctccctccctcccctctcattt 525
           ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 376 taaatttcccttgccctctctccctccctcccctctcattt 336


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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