Query= MSMg01no360_m22.b1 MSMg01no360_m22.b1 CHROMAT_FILE:
MSMg01no360_m22.b1 PHD_FILE: MSMg01no360_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:39 2005
(421 letters)
>mm_chr10_54757519_54758339
Length = 821
Score = 754 bits (390), Expect = 0.0
Identities = 414/430 (96%), Gaps = 13/430 (3%)
Strand = Plus / Minus
Query: 5 gaattctcaaggggtacaaaacctaatataagaggtgatgtgaaattcttatttccaaag 64
|||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 571 gaattctcaaggggcagaaaacctaatataagaggtgatgtgaagttcttatttccaaag 512
Query: 65 tatttaaactcattaaacgcattactaagttccctagagatatgtacaaaaattaatttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tatttaaactcattaaacgcattactaagttccctagagatatgtacaaaaattaatttt 452
Query: 125 cctggaaacaaagcccatcccattacagaagagcatagagattatttctttctttattag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cctggaaacaaagcccatcccattacagaagagcatagagattatttctttctttattag 392
Query: 185 ggtcagaatttgacttccccataaaggttctcatttcacaacaacaaaaacatattaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggtcagaatttgacttccccataaaggttctcatttcacaacaacaaaaacatattaaaa 332
Query: 245 aaatctccagttgataggttaaggtataaaagcagtgggaagatgaagctaaaacactct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aaatctccagttgataggttaaggtataaaagcagtgggaagatgaagctaaaacactct 272
Query: 305 gtgatatactcactgtatcgtcactgtattcatgctaagcttgtgcaatagcctccctta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gtgatatactcactgtatcgtcactgtattcatgctaagcttgtgcaatagcctccctta 212
Query: 365 cag-------------taagttgtgctaagtactatggacactaacaactaaaagaaaac 411
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cagtaagctcatcacctaagttgtgctaagtactatggacactaacaactaaaagaaaac 152
Query: 412 atcttctaag 421
||||||||||
Sbjct: 151 atcttctaag 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space: 334544
Effective search space used: 334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_m22.g1 MSMg01no360_m22.g1 CHROMAT_FILE:
MSMg01no360_m22.g1 PHD_FILE: MSMg01no360_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:39 2005
(424 letters)
>mm_chr10_54570298_54571121
Length = 824
Score = 774 bits (400), Expect = 0.0
Identities = 418/424 (98%)
Strand = Plus / Plus
Query: 1 agcataaatgaggcacacttgcctaataatgaatgatgaatgaattcattctcattttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcataaatgaggcacacttgcctaataatgaatgatgaatgaattcattctcattttgt 260
Query: 61 atagattatttgtatgccttcctctattctctccatttgtattattcacctttacaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atagattatttgtatgccttcctctattctctccatttgtattattcacctttacaactc 320
Query: 121 aattttagaaactattgacagtgttttattggacaaacattttgaaatgctttctatgac 180
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 321 aattttagaaactattgacagtgttttattagacaaacagtttgaaatgctttctatgat 380
Query: 181 ttaatgagttaaatactaatttacctagtgagttaaatatatagtttaaaaatgtatgag 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaatgagttaaatattaatttacctagtgagttaaatatatagtttaaaaatgtatgag 440
Query: 241 tagtgaagatattttctgcagatacttattattcacagcaaaacattagaactagaggct 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 tagtgaagatattttctgcagatactcattattcacagcaaaacattagaactagaggct 500
Query: 301 gtcttagttaatgtactattgctgtgaagagactccatgaccaaggcaacttatgaagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcttagttaatgtactattgctgtgaagagactccatgaccaaggcaacttatgaagaa 560
Query: 361 agtgcttgtttgagggctgtttactgtttcagagggtcagttatggggtggtgggggcag 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 agtgcttgtttgagggctgtttactgtttcagagggtcagtcatggggtggtgggggcag 620
Query: 421 gtaa 424
||||
Sbjct: 621 gtaa 624
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space: 338225
Effective search space used: 338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
