BAC Information

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BAC

Clone NameMSMg01-361B22
Chromosome10 (Build37)
Map Location 29,187,444 - 29,354,099
singlet/doubletdoublet
Overlap geneRspo3, EG630389
Upstream genePtprk, E430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
Downstream geneRpl12, LOC623064, LOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361B22.T7 (MSMg01no361_b22.b1)MSMg01-361B22.TJ (MSMg01no361_b22.g1)
ACCAG470130AG470131
length795779
length of high quality
(start - end)
473 (47 - 519)457 (76 - 532)
definitionCHROMAT_FILE: MSMg01no361_b22.b1 PHD_FILE: MSMg01no361_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:03 2005CHROMAT_FILE: MSMg01no361_b22.g1 PHD_FILE: MSMg01no361_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,187,444 - 29,187,913)(29,353,643 - 29,354,099)
sequence
NTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTATTTTTGAAATGCCTTCTACCACATTAGGTCTGATTACAAAA
CTCTTGAGCACTGAATCAAACACATTAATTTATATGTTGAAATGTCTTGA
TGGATGCATACTTGAATAGCACATTTTGAATAACATGCTGAGTTTTAAAC
ATTCCTAACTACTGGGTAAGTGTATATATTATTTTTATTAATCACATCAT
GTCAATGGTATCTTTAAATTCATTACAATGTAATTCATTAAATCTTTTTT
GATTCATTTTTTTACTCATAAAACTCATGACTTCTTTGTTTATATTACAG
CCCACTAACAAGTTATTCTGCATAAAATATTTTGGTTGTTTTATATGACA
GCTATAAACTTTTATACATTATTTATAAACTGAAATAGGAATACTGATAA
TTCAGGAATTTGTGGAAGTTTTTATTGCTTAAGAATGTATTTTAATCAAT
TATACTCTTTCCCTGTCAATGCCCACACTGGATTACTACCTTCCAATTTT
AACTATTTCAGTTTCAAACCCATTGAGAACACTTAGTCCTCGCTAGATGT
ACATTGGCCTAAAGCCATTTTATGGAGAATTGGTAGCCTCTTCCAGAGTT
GAATTCTTGAATAACTAATCCCAAAAATCAAACCCTACTTACCCCATCCA
ACCTAACCAATCTTATACTTAACCCCCGCCAAGAAAAACCATTCGATTTT
TCCCTGGTTTCAAAAACCAACCTTGTCAAAAAATCTCTCCATTAA
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTATATTTGGAAGCAGCAAACCAT
CATTAAATACCGGAGAATGAATTTCTTAAAGGGGCCTTAATTAGCTGAGG
GAGCTCATGCAAACATCAGATGAGCCCTTCTTGCTGTCAAGAACTCAGCT
TTTTATCTTGTGCAAACACATCTGCATAAACACATTAGTAATCATGACAC
TGGAAGACCTGCTTTTAGACTAAAGCATCATACATCTTTATTGGGACTTA
CTAGAGAAGGAATGGAGGAATCACTCGCAGACACATTCTTTTTCTGCAGA
ATTTAAAATCCAGTTGCCAGCAATTTCTATCTCAAACAAGTGCTAAGTCT
CCAGACATCTAACCAATTGCTCTTACTCCCACAATTCTTACCTCCATGTT
CTGGCTCAAAATGATTAACACTAATGCTGATGGCACATTCCATAACATCT
CACTGAATAATAGCGAAGTAAATTTACCTTCTCCCTTGGCACTTTCACTT
TTCTGATTGTAATGTTCCATGCTACTAAAAGAGAATCCCTCATCCATACA
AAGTTTGTAGAACCCTCCTGGTTCCCGCGAAGTGAAAAATGAATAAAAAA
CTGGGCAATTTTATTGGAAAAAGATAAAAGAAAGGGGCCTCCATTATAAC
CATAAAAGGGTTTTCCTTGGCCTTTTAAAATGGGCCCTTTGGGCCCCCCA
TCAAAAAATGGATTCTTTTATATTTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_b22.b1 MSMg01no361_b22.b1 CHROMAT_FILE:
MSMg01no361_b22.b1 PHD_FILE: MSMg01no361_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:03 2005
         (473 letters)



>mm_chr10_29187241_29188113
          Length = 873

 Score =  893 bits (462), Expect = 0.0
 Identities = 468/470 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttatttttgaaatgccttctaccacattaggtctgattacaaaactcttgagc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttatttttgaaatgccttctaccacattaggtctgattacaaaactcttgagc 263

                                                                       
Query: 64  actgaatcaaacacattaatttatatgttgaaatgtcttgatggatgcatacttgaatag 123
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 264 actgaatcaaacacattaatttatatgttgaaatgtcttgatgggtacatacttgaatag 323

                                                                       
Query: 124 cacattttgaataacatgctgagttttaaacattcctaactactgggtaagtgtatatat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacattttgaataacatgctgagttttaaacattcctaactactgggtaagtgtatatat 383

                                                                       
Query: 184 tatttttattaatcacatcatgtcaatggtatctttaaattcattacaatgtaattcatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttttattaatcacatcatgtcaatggtatctttaaattcattacaatgtaattcatt 443

                                                                       
Query: 244 aaatcttttttgattcatttttttactcataaaactcatgacttctttgtttatattaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaatcttttttgattcatttttttactcataaaactcatgacttctttgtttatattaca 503

                                                                       
Query: 304 gcccactaacaagttattctgcataaaatattttggttgttttatatgacagctataaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcccactaacaagttattctgcataaaatattttggttgttttatatgacagctataaac 563

                                                                       
Query: 364 ttttatacattatttataaactgaaataggaatactgataattcaggaatttgtggaagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttatacattatttataaactgaaataggaatactgataattcaggaatttgtggaagt 623

                                                             
Query: 424 ttttattgcttaagaatgtattttaatcaattatactctttccctgtcaa 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttttattgcttaagaatgtattttaatcaattatactctttccctgtcaa 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no361_b22.g1 MSMg01no361_b22.g1 CHROMAT_FILE:
MSMg01no361_b22.g1 PHD_FILE: MSMg01no361_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:03 2005
         (457 letters)



>mm_chr10_29353443_29354299
          Length = 857

 Score =  861 bits (445), Expect = 0.0
 Identities = 454/457 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtatatttggaagcagcaaaccatcattaaataccggagaatgaatttcttaaaggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agtatatttggaagcagcaaaccatcattaaataccggagaatgaatttcttaaaggggc 598

                                                                       
Query: 61  cttaattagctgagggagctcatgcaaacatcagatgagcccttcttgctgtcaagaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 cttaattagctgagggagctcatgcaaacatcagatgagcccttcttgctgtcaagaact 538

                                                                       
Query: 121 cagctttttatcttgtgcaaacacatctgcataaacacattagtaatcatgacactggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cagctttttatcttgtgcaaacacatctgcataaacacattagtaatcatgacactggaa 478

                                                                       
Query: 181 gacctgcttttagactaaagcatcatacatctttattgggacttactagagaaggaatgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 477 gacctgcttttagactaaagcatcatacatctttattgggacttactaaagaaagaatgg 418

                                                                       
Query: 241 aggaatcactcgcagacacattctttttctgcagaatttaaaatccagttgccagcaatt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aggaatcactcacagacacattctttttctgcagaatttaaaatccagttgccagcaatt 358

                                                                       
Query: 301 tctatctcaaacaagtgctaagtctccagacatctaaccaattgctcttactcccacaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctatctcaaacaagtgctaagtctccagacatctaaccaattgctcttactcccacaat 298

                                                                       
Query: 361 tcttacctccatgttctggctcaaaatgattaacactaatgctgatggcacattccataa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcttacctccatgttctggctcaaaatgattaacactaatgctgatggcacattccataa 238

                                                
Query: 421 catctcactgaataatagcgaagtaaatttaccttct 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 catctcactgaataatagcgaagtaaatttaccttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)