BAC Information

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BAC

Clone NameMSMg01-361G19
Chromosome10 (Build37)
Map Location 77,650,496 - 77,650,955
singlet/doubletsinglet
Overlap geneTmem1
Upstream genePofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2
Downstream geneAgpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361G19.T7 (MSMg01no361_g19.b1)MSMg01-361G19.TJ (MSMg01no361_g19.g1)
ACCAG470358AG470359
length762775
length of high quality
(start - end)		538 (66 - 603)460 (79 - 538)
definitionCHROMAT_FILE: MSMg01no361_g19.b1 PHD_FILE: MSMg01no361_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:28 2005CHROMAT_FILE: MSMg01no361_g19.g1 PHD_FILE: MSMg01no361_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATAATTGCGGGCGCTATACGACTCCTATTCGGAGAGGATCCGCG
GAATCCATCTCTTACACCCGTTCAAAATGTGGTTGGAGCCGGGTGTGGTG
GCGCAAGCCTTTAATCCCCAGCACTCGGGAGGCAGAGGCAGGAGGACTTC
TGAGTTCGAGGCCAGCCTAGTCTACAGAGTGAGTTCCAGGACAGCCAGGG
CTACACAGAGAAACCCTGTCTCGAAACACCAAAAAAAAAAAAATGTGGTT
GGGAAATAGAAGCTATGAATTTAAAGACGTGTGGGGAAAAGGTATCTGAA
AGGGTTTGGAGGGAGAAAGGATAAGGGAGACATGTTGTAATAAATCATAA
TCTCAGGAAAGTTGTTTAAGTGCTTGGTTACGCCGATAACATCTTTACCA
CTATTGCAGTAACATATTGTGGCGGCAGGTTAATGTTGTATATCGCGGGG
TTCAGTAGCTTGGTTGAGGATTTCCTTTCTCCTCTGGTCATCTGCAGTAC
CTTCCAGTACCATGAATGCCAGGCAGTAGGGGTGAAGCTTCTAGTTAGAC
TTGATCAGGCTCCTATCCGTTTGCCCATGGATCCCTCTCTCTTTCCTCCC
TGATTTTAGATTCGGTGCTCCCTCGGCAATGTGCCCAGGTAAGTTGTTCT
TCTCCCGAGACCATGAAACTGTCTACCTGGATGCTTCCCAGGAACAATCT
TACACCGATCTGGAAACTTAAATTGTTTGTCCCCCAGGTTGGGGAAGGGT
TTGTTCAACCTT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAACAGCATGACACTTGTTT
GGCTCTTCTGCATCCACATGACAGGCAGGTTGGCTTGCCCCCTCCCCAGG
CTTACTCTTTGGTGGCTTGGTCTGACTTCCTGTGTGTTCCACAGACAGCT
GGATAGAAAATGACAGCCTGTCAGTGGACAAGCACCTAGATGACCAGCTG
GACTGCAGCAGCTTGCGGAGTAGAGGCAGCACACACTCCACTTCCAGCAG
CGAGCACAAAGGCTTGCCCATGCCCCGGCTCCAAGCACTGCCCGCTGGCC
AGGTCTTCAACTCCAGCACTGGCATGCAGGTCCTGGTCATTCCCAGTCAA
GACGACCACGTCCTGGAAGTCAGTGTTACCTGACTGTGCCATGGTCCAGT
GAAGCCACAGATTGGGTGTGAGTGCGCATTAGGGACTGTGGCTGGATTGT
GGTCTGTGGTAACACACTAGCTCTAACCAGACTTTGGCAGTCCTGCCTAG
CTACAGACACAGTAGAGAACAGTGTCCTTCATCTGCGCATTGGACTATAG
CGTCACCTCCTGTTGTCTATGACACAGGACTTTGTTTTTCTTTTTTTATC
CCTGGGCCCTGTGCCCGGTGTTGGAATACCCAACTCCTTTAAACCTTCCT
ATAGGGGCCTGGTTCCTTCTTTTTACCCTCTCCCTATGGCGTTTTTTTTA
ATCCCTTGGTTCCCTTTTTTTGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_g19.g1 MSMg01no361_g19.g1 CHROMAT_FILE:
MSMg01no361_g19.g1 PHD_FILE: MSMg01no361_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:28 2005
         (460 letters)



>mm_chr10_77650296_77651155
          Length = 860

 Score =  890 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaacagcatgacacttgtttggctcttctgcatccacatgacaggcaggttggcttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tgtaacagcatgacacttgtttggctcttctgcatccacatgacaggcaggttggcttgc 601

                                                                       
Query: 61  cccctccccaggcttactctttggtggcttggtctgacttcctgtgtgttccacagacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cccctccccaggcttactctttggtggcttggtctgacttcctgtgtgttccacagacag 541

                                                                       
Query: 121 ctggatagaaaatgacagcctgtcagtggacaagcacctagatgaccagctggactgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ctggatagaaaatgacagcctgtcagtggacaagcacctagatgaccagctggactgcag 481

                                                                       
Query: 181 cagcttgcggagtagaggcagcacacactccacttccagcagcgagcacaaaggcttgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cagcttgcggagtagaggcagcacacactccacttccagcagcgagcacaaaggcttgcc 421

                                                                       
Query: 241 catgccccggctccaagcactgcccgctggccaggtcttcaactccagcactggcatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 catgccccggctccaagcactgcccgctggccaggtcttcaactccagcactggcatgca 361

                                                                       
Query: 301 ggtcctggtcattcccagtcaagacgaccacgtcctggaagtcagtgttacctgactgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggtcctggtcattcccagtcaagacgaccacgtcctggaagtcagtgttacctgactgtg 301

                                                                       
Query: 361 ccatggtccagtgaagccacagattgggtgtgagtgcgcattagggactgtggctggatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccatggtccagtgaagccacagattgggtgtgagtgcgcattagggactgtggctggatt 241

                                                   
Query: 421 gtggtctgtggtaacacactagctctaaccagactttggc 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gtggtctgtggtaacacactagctctaaccagactttggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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