Query= MSMg01no361_l23.b1 MSMg01no361_l23.b1 CHROMAT_FILE:
MSMg01no361_l23.b1 PHD_FILE: MSMg01no361_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:52 2005
(552 letters)
>mm_chr10_102566381_102567332
Length = 952
Score = 743 bits (384), Expect = 0.0
Identities = 499/550 (90%), Gaps = 23/550 (4%)
Strand = Plus / Minus
Query: 5 gaattctcaggagatgcgtttaattaaatcatcaaacttagagcttggtattcctccatc 64
|||||||||||||| | |||||||||||||||||||||||| ||| ||| ||||||| ||
Sbjct: 750 gaattctcaggagaggagtttaattaaatcatcaaacttagggctgggtgttcctccttc 691
Query: 65 ctttctgctccctccctccctcccttcatcccccctcttgtgtgtgtggctgtgggtcta 124
|||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 690 ctttctgctctctccctccctcccttcatcccccctct--------------------ta 651
Query: 125 tatttgctccctctgctataggggaaagcttctttggtgatggctaagcaaggtactgat 184
||||||||| ||||| || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 650 tatttgctctctctgatacaggggaaagcttctttggtgagggctaagcaagatactgat 591
Query: 185 ctaggagtataaaaggatgtcagtaggagtcactttatcactatcagagtgggagaagct 244
||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 590 ctatgagtataaaaggatgtcagtaggagtcactttatcactatcagagtggtcgaagct 531
Query: 245 acgttagcatgacatcaccatagtgttaagtttgtgttgacattgtaccttgttttcctt 304
|| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 530 actttagcatgacatcaccatagtgttaagtttgtgttgacattatacctttttttcctt 471
Query: 305 tctcccaaactccacactccctctctgtaagccatccactgatctttt-cactttctttg 363
||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||
Sbjct: 470 tctcccaaactccacactccctctctgtaagccatccactgatttttttctctttctttg 411
Query: 364 taattgtggcatcttagaaatacccatgggaag-agttacagagacaaagtttggagcta 422
|||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct: 410 taattgtgacatcttagaaatgcccatgg-aaggagttacagagacaaagtttggagcta 352
Query: 423 agacaaaaggatggaccatccagggactaccccacccagggatccatcccataaccagcc 482
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 351 agacaaaaggatggaccatccagggactacccaacccagggatccatcccataaccagcc 292
Query: 483 accgaatgcagacactgttgcatacgccagcaaaattttgctgaaaggaccctgatagag 542
||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 291 accaaatgcagacactattgcatacaccagcaagattttgctgaaaggaccctgatagag 232
Query: 543 ctgtctcgtt 552
|||| |||||
Sbjct: 231 ctgtttcgtt 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_l23.g1 MSMg01no361_l23.g1 CHROMAT_FILE:
MSMg01no361_l23.g1 PHD_FILE: MSMg01no361_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:53 2005
(450 letters)
>mm_chr10_102428059_102428910
Length = 852
Score = 777 bits (402), Expect = 0.0
Identities = 439/452 (97%), Gaps = 2/452 (0%)
Strand = Plus / Plus
Query: 1 ttcctactatatatttttcaggatctggaattttctaccacacatacacagttgatggtc 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 ttcctactacatatttttcaggatctggaattttctaccacgcatacacagttgatggtc 260
Query: 61 acatctaatctggtggctctaagtgtggtcattgtcttggactggtttcattattgattg 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 acatctaatctggtggctctaagtgtggtcattgtcttgaactggtttcattattgattg 320
Query: 121 ctctaatttgacccttggcttctgcctataactcattactttaggtataaaac--ttttt 178
||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct: 321 ctctaatttgacccttggcttcttcctataactcattactttagatataaaacttttttt 380
Query: 179 aacttagaaaaataatttttaaactcttgtactaagatttttgctctacagtaatttgtc 238
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactaagaaaaataatttttaaactcttgtactaagatttttgctctacagtaatttgtc 440
Query: 239 tgtagttcaaaagtgactctattactaatcaaactacatctacatcactgaatttttcct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtagttcaaaagtgactctattactaatcaaactacatctacatcactgaatttttcct 500
Query: 299 agactatattttcttgtttattatttattatagtgcttcaaacccaaagcttattggctc 358
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacaatattttcttgtttattatttattatagtgcttcaaacccaaagcttattggctc 560
Query: 359 tttccataaatactgacttgctgctattatcacaattactacaaactaaccaatccccac 418
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 tttccataaatagtgacttgctgctattatcacaattactacacactaaccaatccccat 620
Query: 419 cttcaactttaagctattttatttcactcaag 450
|||||||| |||||||||||||||||||||||
Sbjct: 621 cttcaactctaagctattttatttcactcaag 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 852
Length adjustment: 10
Effective length of query: 440
Effective length of database: 842
Effective search space: 370480
Effective search space used: 370480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
