BAC Information

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BAC

Clone NameMSMg01-362C16
Chromosome10 (Build37)
Map Location 92,479,426 - 92,672,313
singlet/doubletdoublet
Overlap gene4930485B16Rik, EG667314, Pctk2
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814, Nedd1, Gm872
Downstream geneElk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362C16.T7 (MSMg01no362_c16.b1)MSMg01-362C16.TJ (MSMg01no362_c16.g1)
ACCAG470917AG470918
length762755
length of high quality
(start - end)		501 (48 - 548)528 (79 - 606)
definitionCHROMAT_FILE: MSMg01no362_c16.b1 PHD_FILE: MSMg01no362_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:26 2005CHROMAT_FILE: MSMg01no362_c16.g1 PHD_FILE: MSMg01no362_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,671,817 - 92,672,313)(92,479,426 - 92,479,953)
sequence
NCCCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGGGAATCTGAGAATAGCAGGGTTCTGCTCCATGTATCGAG
CAGATTCTCTTAGAAGAGGATTAAATATTACAAAATCATCTTCAAGACTT
GAGACAAATATAAATTTTGCCCTGCATATAGAATGATAACCAAATATTGT
CTTGAATTTCTTACTGAGCTCATTTTTCTCTGCTCTTGTCAAAACCCAGA
CCATCAAGGAAAACATTACAAAACCAAGATAGACCACGAGAACAGACGCA
AGGCCACCTTGGCTCTGCCAACAAGATGGACAGTGTTCAGCAAACAATGA
TGTCTGAGGAAGAAAGGCAAGGTCTATGAAACCTGCGTAGGATAAACTGA
CTTCCCCCCACTGTGGGTGAAGCAGTACTACAGTGCCTTAGGGCATCCAC
GGTCCCAGACCATGACTGCTAACCTGCACAACCATGCGTCTCTCACACCA
CAAGCCTTCCCCTGCAATGAAGCAAGCGAGCACGCGTTGACCACCACCAG
AGATCTCGAACCAGATTTTTAAGCTCAGACAAGGGAGCTCCGCAGACACT
GAAAAACATGGCTTATTATTGGCTTGTTTTATCCCCTTCCTGATCACCAA
GACATTCCAAAGGTTAATTTTGGCTTTGAAAAAATAACAGCGGCCTAAAA
ACATTTTACCAGTTTAACTTTTATCTTCCAATTTTATAAACCTCTTTTAA
ATTGTTTACCTT

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTGGTAAACGCTCTCTTT
CTATATACCGTTTCTTGAATCCCAGAGGCATACATACACATGTCACTATG
GATCATGGGCTGGTGTTTGTAGGACTATTAAAAAAAAGACTACTAAATGA
ACGTCTTCGATGGAAACAGACGCGTATGTCTAAATGCAATGGCCATATAT
TATTAATGGGGGGCATTTTGTCTTTAAATCCACAAAATATCTACCATCAG
ACTTTATTGTGCTTTGAAAATTCATAACACAGATACCTGCATTTGCACTG
ATAAGCCACAATCCTATTCTTAGTACAACTTGCAATGTGACTCTCAAGAA
ATAAAGACTATTGATACATGTGGTTCATCAAAGGAGTGTCCTTGGGAGTT
TATATCATCAAGATGTCAATTCTGTGATTCTGATACAGAGACAATACCAA
ACTATCAGTGCTAAACCATATTTAAAGTCAGATGAGCTGCATCAGCAGAG
ATGTGTAACTTCCTCGCAATACTAATAACACTAGTTAAAATAATAATAGT
AATATTTTAGTCTCGATAATCATAGGCAGAACAGACATATGTCTTTATTT
TTATAAATATTTAAACAGCGTAAGAGAAGGGGTTGGGAAATTCATTCTTC
CCAGGAACCACATTTTTTCCCAACCCCCTGAATTGGTTCCAACCCCCTTT
TAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_c16.b1 MSMg01no362_c16.b1 CHROMAT_FILE:
MSMg01no362_c16.b1 PHD_FILE: MSMg01no362_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:26 2005
         (501 letters)



>mm_chr10_92671613_92672513
          Length = 901

 Score =  961 bits (497), Expect = 0.0
 Identities = 497/497 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaatgggaatctgagaatagcagggttctgctccatgtatcgagcagattctctt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gaattcaatgggaatctgagaatagcagggttctgctccatgtatcgagcagattctctt 642

                                                                       
Query: 65  agaagaggattaaatattacaaaatcatcttcaagacttgagacaaatataaattttgcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agaagaggattaaatattacaaaatcatcttcaagacttgagacaaatataaattttgcc 582

                                                                       
Query: 125 ctgcatatagaatgataaccaaatattgtcttgaatttcttactgagctcatttttctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgcatatagaatgataaccaaatattgtcttgaatttcttactgagctcatttttctct 522

                                                                       
Query: 185 gctcttgtcaaaacccagaccatcaaggaaaacattacaaaaccaagatagaccacgaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gctcttgtcaaaacccagaccatcaaggaaaacattacaaaaccaagatagaccacgaga 462

                                                                       
Query: 245 acagacgcaaggccaccttggctctgccaacaagatggacagtgttcagcaaacaatgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acagacgcaaggccaccttggctctgccaacaagatggacagtgttcagcaaacaatgat 402

                                                                       
Query: 305 gtctgaggaagaaaggcaaggtctatgaaacctgcgtaggataaactgacttccccccac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtctgaggaagaaaggcaaggtctatgaaacctgcgtaggataaactgacttccccccac 342

                                                                       
Query: 365 tgtgggtgaagcagtactacagtgccttagggcatccacggtcccagaccatgactgcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgtgggtgaagcagtactacagtgccttagggcatccacggtcccagaccatgactgcta 282

                                                                       
Query: 425 acctgcacaaccatgcgtctctcacaccacaagccttcccctgcaatgaagcaagcgagc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 acctgcacaaccatgcgtctctcacaccacaagccttcccctgcaatgaagcaagcgagc 222

                            
Query: 485 acgcgttgaccaccacc 501
           |||||||||||||||||
Sbjct: 221 acgcgttgaccaccacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_c16.g1 MSMg01no362_c16.g1 CHROMAT_FILE:
MSMg01no362_c16.g1 PHD_FILE: MSMg01no362_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:26 2005
         (528 letters)



>mm_chr10_92479226_92480153
          Length = 928

 Score = 1021 bits (528), Expect = 0.0
 Identities = 528/528 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgtggtaaacgctctctttctatataccgtttcttgaatcccagaggcatacataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgtggtaaacgctctctttctatataccgtttcttgaatcccagaggcatacataca 260

                                                                       
Query: 61  catgtcactatggatcatgggctggtgtttgtaggactattaaaaaaaagactactaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtcactatggatcatgggctggtgtttgtaggactattaaaaaaaagactactaaat 320

                                                                       
Query: 121 gaacgtcttcgatggaaacagacgcgtatgtctaaatgcaatggccatatattattaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacgtcttcgatggaaacagacgcgtatgtctaaatgcaatggccatatattattaatg 380

                                                                       
Query: 181 gggggcattttgtctttaaatccacaaaatatctaccatcagactttattgtgctttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggggcattttgtctttaaatccacaaaatatctaccatcagactttattgtgctttgaa 440

                                                                       
Query: 241 aattcataacacagatacctgcatttgcactgataagccacaatcctattcttagtacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcataacacagatacctgcatttgcactgataagccacaatcctattcttagtacaa 500

                                                                       
Query: 301 cttgcaatgtgactctcaagaaataaagactattgatacatgtggttcatcaaaggagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgcaatgtgactctcaagaaataaagactattgatacatgtggttcatcaaaggagtg 560

                                                                       
Query: 361 tccttgggagtttatatcatcaagatgtcaattctgtgattctgatacagagacaatacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttgggagtttatatcatcaagatgtcaattctgtgattctgatacagagacaatacc 620

                                                                       
Query: 421 aaactatcagtgctaaaccatatttaaagtcagatgagctgcatcagcagagatgtgtaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaactatcagtgctaaaccatatttaaagtcagatgagctgcatcagcagagatgtgtaa 680

                                                           
Query: 481 cttcctcgcaatactaataacactagttaaaataataatagtaatatt 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcctcgcaatactaataacactagttaaaataataatagtaatatt 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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