BAC Information

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BAC

Clone NameMSMg01-362G04
Chromosome10 (Build37)
Map Location 18,942,137 - 18,942,576
singlet/doubletsinglet
Overlap genenone
Upstream geneCcdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5
Downstream geneEG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362G04.T7 (MSMg01no362_g04.b1)MSMg01-362G04.TJ (MSMg01no362_g04.g1)
ACCAG471083AG471084
length808787
length of high quality
(start - end)
446 (38 - 483)512 (73 - 584)
definitionCHROMAT_FILE: MSMg01no362_g04.b1 PHD_FILE: MSMg01no362_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:44 2005CHROMAT_FILE: MSMg01no362_g04.g1 PHD_FILE: MSMg01no362_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:44 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
TACTTAGATAGCTCTGAGCTAATGCAATCTGATGCAAATCAAATAGTGAT
GATAATCTCACAATATACTTTGGTAGCTTGACAGACTGGTCAAACTCAGC
CAATTCTTCTGAAGGGTACATTGACCAAAAATGCATGGATAATCAAAGAT
CTGGTTAATATAATTGAAACAGAGGTCTTCCTCAAATGTTGAATCAAGTA
ATGGCAGAAAGGTCTTTTCATAAGTTTAAAAACAAATTGTCTTAAGACAG
AAAAGACAGGCCCCCTCCACATTTTGGCTTTGGTGATTCAACAAAGAGAT
CAGTGGAAATCTCAAATCTGATGTGATGTCTGCCTTTCTATAACAACTGA
TGAGTATAGTTGATAAAATCCTCTCCCATTCCTTACCAAAGCTCTCTTCT
TCCTTTTGGATGAAGGAATAATTGTTTACCTATAGTAATGGATTAGAAAT
GCTATTCAGATTTAGAATGAACATCACACTTAAGACAGATACTATAACAA
TAATATTCCCATCTTAGCACAGATTTAATTTTCCACTTGTCTTTGCGTGC
TATGTTAGTGCCGCTTTATGTTTTTCATGATTAAACCGTACCCCCTTGTA
CCTACACAGTCTTTGCTTTAATTTTCCACTATCCTACCTTTATTTTTCTT
CTCTTAACTTCCTTTACCATCCCCCACCTCCTTTCTTTTCTAAATATCTA
TTCCTTTTTTTTTACCATACTATCTCTCTTCTTTCTTATCCTTCGCCCTA
ATTCTATN
GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTCTCCAACACTTTTAAGATGAA
GCAATGTTGGACTTTGTCAAATGGTCTTCAGCATTTAGAGATGATGATGT
GATTTTTATTCTTTGAGTTTGTTTATTATTGGATTACGTTGGGAAAAGAT
CTTTACTAACCCTACATCCAATAGAGGGTTAATATTCAAACTATATGAAG
ATCTCAAGAAGTTAGATCCAAATTATAACCCAATTCAGAAGTGGGCTACA
GAACTAAACAGAGAATTCTCAAGAGAGGAACCTCAAATGGCTGAGAAACA
CAGAAATGTTCAAAATTCTTAATCATCAAGGAAATGCATATTAAAATGTC
CCTGAGATTCTACTTTATACAAATCAAAATGGCTAAGATCAAAAACTCAA
GTGACAGCACATGCTGGCAAGGGTATGGAGAAAGGGAAAAGCCCTCCATA
GTTGGTAGAATTGCATACTGGTATAACCACTTTGGAAATCAATCTGGCAA
TTCCTCAGAAAAATTGGAAATAGTTCTATCTGAATGCCCAACTATACCAG
TCTTCAGGTATACCCAAAATATGCTGTACAATATCACATAAACCTGTGCT
TCACTGGGTTCATAGCAGCCTTATTTGTAATAGCCTGAAACTGAAATGCA
TCCCGATGTCCCTCCCTCCACAGAGTGGATTCCGAAAAAGGGGTCTCTCT
TTACCATGGAATAACTATTTTTCTCTTAAACATAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_g04.b1 MSMg01no362_g04.b1 CHROMAT_FILE:
MSMg01no362_g04.b1 PHD_FILE: MSMg01no362_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:44 2005
         (446 letters)



>mm_chr10_18941930_18942776
          Length = 847

 Score =  598 bits (309), Expect = e-175
 Identities = 408/441 (92%), Gaps = 3/441 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctacttagatagctctgagctaatgcaatctgatgcaaatcaaatagtgatgata 67
           |||||||||| |||||  ||||||||||||  |||||||| |||||||||| || |||||
Sbjct: 208 gaattctactcagataattctgagctaatgggatctgatgaaaatcaaataatgctgata 267

                                                                       
Query: 68  atctcacaatatactttggtagcttgacagactggtcaaactcagccaattcttctgaag 127
           || ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 268 atttcacaatatactttggtagcttgacagactggtcaaactcagccagttcttgtgaag 327

                                                                       
Query: 128 ggtacattgaccaaaaatgcatggataatcaaagatctggttaatataattgaaacagag 187
           |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 328 ggtacattgaccaaaaatgcatggataatcaaagatttggttaatatagttgaaacagag 387

                                                                       
Query: 188 gtcttcctcaaatgttgaatcaagtaatggcagaaaggtcttttcataagtttaaaaaca 247
           | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 388 gccttcctcaaatgttgaatcaagtaatggctgaaaggtcttttcataaatttaaaaaca 447

                                                                       
Query: 248 aattgtcttaagacagaaaagacaggccccctccacat-tttggctttggtgattcaaca 306
           ||||| |||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||
Sbjct: 448 aattgccttaaggcagaaaagacaggccccctccacatctttgcctttggtgagtcaaca 507

                                                                       
Query: 307 aagagatcagtggaaatctcaaatctgatgtgatgtctgcctttctataacaactgatga 366
           ||||||||| |||||||||||||| |||||||||| |||||||||||| || ||||||||
Sbjct: 508 aagagatcaatggaaatctcaaatttgatgtgatgcctgcctttctatgaccactgatga 567

                                                                       
Query: 367 gtatagttgataaaatcctctcccattccttaccaaagc-tctcttcttccttttggatg 425
           ||| ||| |||||||||||||||||| ||||||||| || ||||||||||||||||| ||
Sbjct: 568 gtaaagtggataaaatcctctcccatcccttaccaa-gcctctcttcttccttttgggtg 626

                                
Query: 426 aaggaataattgtttacctat 446
           |||||||||||||||| ||||
Sbjct: 627 aaggaataattgtttatctat 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 847
Length adjustment: 10
Effective length of query: 436
Effective length of database: 837
Effective search space:   364932
Effective search space used:   364932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)