BAC Information

Click to search

BAC

Clone NameMSMg01-364J13
Chromosome10 (Build37)
Map Location 124,095,086 - 124,095,430
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790, 4930503E24Rik
Downstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317, LOC100042994
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364J13.T7 (MSMg01no364_j13.b1)MSMg01-364J13.TJ (MSMg01no364_j13.g1)
ACCAG472756AG472757
length787809
length of high quality
(start - end)
470 (48 - 517)345 (76 - 420)
definitionCHROMAT_FILE: MSMg01no364_j13.b1 PHD_FILE: MSMg01no364_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:45 2005CHROMAT_FILE: MSMg01no364_j13.g1 PHD_FILE: MSMg01no364_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCGCG
GAATTCTCACCTGATTCATACCGAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTAAGAT
TCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGCAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGATTTTTCAGCAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCCCAACTGGTAAGAAGGGCACATGCTCCACTAT
GTTCATAGCAGCATTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATATGGTACATCTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCCA
ATGGATGGACCTGGAGGGCATCTTCCTGAGTGAGGAACACATTCCCAAAG
GACCTCCCCCAATATGGACTCCCGGAAAATGGGAATTTACCCCAAACCCA
GGAAACCCAAAATTAAAAAAAATTTCCTAAAACATGGGAACCTCCCAAAA
ATACAAATGAAGGTGGGAACTATTTCCCCTCCCTTAAATGGGGGACCTAA
AACCCCCTGAGAGAATTAATTAAACCCCCTTTTGAGT
NCCGATGATANTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTATTTGAGGACACAGCACACA
AAGTCCTTGTTTTCATGGTGAGATTCTTGAAAATGGAAAGATGGAGAGTC
TTCTCTGTGAAAATGGCATCTATTTATGAAAAGGTAACATGAGTAAAAGG
GAGAAAGGAGAGTGGCACATTAGGGAATGAGTGTTGGGTGTGAGCACAGA
TTTTGAAGGGTGGTCGTTGAAATGAAGTAGTACTTGGAGCTTGGATACCC
ATGACAGATAGTAAGTATTCATGAGACTTGTTGGGTTGGGAAAAGCAGTA
TGGAAGCTGGTCAGCACTCAGAAAATCTTGGGTTGTCTATAAGCTGTCCG
TTTATAAACTTTAGAAGCTGTCACCGTGGGCATGGTGGTGCCTGTGGTGG
TGGCTAGAATGTCCCTAAGTTTGTTTACTAGGATCATATTCTAATTAAGA
TGCCAGAGACATGTAGGAACAAGGCGAAACTTTTACATGGCTGAGGGTTT
CCCTGTATAAATTTCTCTAACATAGCTGCCTATATTTCGAAAATTCCTCC
TCCGTGTTTTCAACATTCCGATATTGGACACCTTTCCCTTCTCTTCTCCA
ACATTTGCTAGATCTTCCTCTTCTTTTATTTTCCTGCATTAGCGTGTTCC
CTCAATTGTTTCTTCTTCTTATCGTCCTTCCCTTTCCTTCGTTGTCGTCT
GTGTCCTATCACTCCACCTCTTCCTTACTCTTTCTCTTTTCCTACTACCC
TTATTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_j13.g1 MSMg01no364_j13.g1 CHROMAT_FILE:
MSMg01no364_j13.g1 PHD_FILE: MSMg01no364_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:45 2005
         (345 letters)



>mm_chr10_124094886_124095630
          Length = 745

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtatttgaggacacagcacacaaagtccttgttttcatggtgagattcttgaaaatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 545 attgtatttgaggacacagcacacaaagtccttgttttcatggtgagagtcttgaaaatg 486

                                                                       
Query: 61  gaaagatggagagtcttctctgtgaaaatggcatctatttatgaaaaggtaacatgagta 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaaagacggagagtcttctctgtgaaaatggcatctatttatgaaaaggtaacatgagta 426

                                                                       
Query: 121 aaagggagaaaggagagtggcacattagggaatgagtgttgggtgtgagcacagattttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaagggagaaaggagagtggcacattagggaatgagtgttgggtgtgagcacagattttg 366

                                                                       
Query: 181 aagggtggtcgttgaaatgaagtagtacttggagcttggatacccatgacagatagtaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aagggtggtcgttgaaatgaagtagtacttggagcttggatacccatgacagatagtaag 306

                                                                       
Query: 241 tattcatgagacttgttgggttgggaaaagcagtatggaagctggtcagcactcagaaaa 300
           ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 305 tattcatgaaacttggtgggttgggaaaagcagtatggaggctggtcagcactcagaaaa 246

                                                        
Query: 301 tcttgggttgtctataagctgtccgtttataaactttagaagctg 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcttgggttgtctataagctgtccgtttataaactttagaagctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)