BAC Information

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BAC

Clone NameMSMg01-365A13
Chromosome10 (Build37)
Map Location 65,978,594 - 65,978,832
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC216036, 1700023F02Rik, 4930407I19Rik
Downstream geneReep3, Jmjd1c, Nrbf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365A13.T7 (MSMg01no365_a13.b1)MSMg01-365A13.TJ (MSMg01no365_a13.g1)
ACCAG473087AG473088
length749739
length of high quality
(start - end)
239 (70 - 308)565 (56 - 620)
definitionCHROMAT_FILE: MSMg01no365_a13.b1 PHD_FILE: MSMg01no365_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:25 2005CHROMAT_FILE: MSMg01no365_a13.g1 PHD_FILE: MSMg01no365_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTTTCCCGTTTGAAAAATATAAATGAACTTTTTCCTGTTTATTCCTGG
CATTGATCCTATTCTACATGGGATAAAGGCAGTGGGGCCGTTATGGTAGA
GCTATAGGAGAATATAAGAGCTTACATTTTATTCTCCCCACCTCCACACA
CATAAACAGGGCCATTTGGGATATGACATCAGGTGGGTAGACACTTATTT
AATTTAAACCCAGGCTAACTCGGGTATTTTATTACTGCTATGACATCAGT
GCCCTGACAATTTTGATAAAAGATGGTTTTCCAGTTTTGTAACTTCATTA
ACTCAATGCCTAATTAATGAGATTGATACAGCTGGTAGCCTGCTTATATT
ATTAAGTATTAAACATACAAGTATCAAAATACTATGTAAAGCTTTGTAAA
TAATAACCTAGCTATTTTATTTTCTAAACTTTAAGCCTCTGAATATATTT
TAAATATTAAGTCTCAGAAACTATTTCAATATGGTAGCTTTTCTCTATTC
TTTTCTTCATTGGTACTGGCAAGATTTCCAGCAGTCTCAGAAGGCTAATC
AACTTTCTCCACATGAGTGAACTTAATCTTTTTACATTTTAAACTTGTTC
TATTCTCGGGCAATCTGTGTGTTCCAATCTATCTCATAATTGACCCCGTT
GTGGAACTCCCAACCTTGCTACCGCGTATAAAAGTTTTTTTTGATGGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAGTACTATATTGAATAGGTAGGGAGAAAGTGGGAAGCCTTGTCT
AGTCCCTGACTTTAGTGGGATTGCATCCAGTTTCTCTCCATTTACTTTGA
TGTTGGCTACTGGTTTGCTGTAGATTGCTTTTATTATGTTTAGATATGGT
CCTCGAAGAAATTCAAAACACCATCAGATCCTTCTACAAAAGGCTATACT
CAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTAGACAGATTC
CAGGTACCAAAGTTAAATCAGGATCAAGTTAACAATCTAACAGTCCCATA
TCCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAACCAAAAAAAG
ACCAGGACCAGATGGGTTTAGTGCAGAGTTCTACCAGATCTTCAAAGAAG
ATCTAATTCCAGTTCTTCACAAACTATTCAACAAAATAGAAGTAGAAGGT
ACTCTACGCAATCATTCTATGAAGCCAAAATTACTCTGATACCTAAACCA
CAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTTCTCTTATGAA
TATCGATGTAAAAATCCTCAATAAAATTCTCGCTAACTGAGTCCAAGAAC
ACATTAAAGCAATCATTCCTCCCTGACCAAGTAGGTTTTTATTCCGTGAA
GCCGCGGAGGGTTTATAATACAAAAATCCCCCCATGGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_a13.b1 MSMg01no365_a13.b1 CHROMAT_FILE:
MSMg01no365_a13.b1 PHD_FILE: MSMg01no365_a13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:25 2005
         (239 letters)



>mm_chr10_65978394_65979032
          Length = 639

 Score =  455 bits (235), Expect = e-132
 Identities = 238/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataaatgaactttttcctgtttattcctggcattgatcctattctacatgggataaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tataaatgaactttttcctgtttattcctggcattgatcctattctacatgggataaagg 380

                                                                       
Query: 61  cagtggggccgttatggtagagctataggagaatataagagcttacattttattctcccc 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagtggggccgttatgttagagctataggagaatataagagcttacattttattctcccc 320

                                                                       
Query: 121 acctccacacacataaacagggccatttgggatatgacatcaggtgggtagacacttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 acctccacacacataaacagggccatttgggatatgacatcaggtgggtagacacttatt 260

                                                                      
Query: 181 taatttaaacccaggctaactcgggtattttattactgctatgacatcagtgccctgac 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 taatttaaacccaggctaactcgggtattttattactgctatgacatcagtgccctgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)