BAC Information

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BAC

Clone NameMSMg01-365A21
Chromosome10 (Build37)
Map Location 41,698,636 - 41,911,233
singlet/doubletdoublet
Overlap gene1700016J18Rik, LOC624784, Foxo3a
Upstream geneGpr6, A530089I17Rik, LOC633979, Zbtb24, Mical1, Smpd2, Ppil6, Cd164, 5033413D22Rik, EG629461, 2410017P07Rik, Sesn1, Armc2
Downstream geneLace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06, Sobp, 9030612E09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365A21.T7 (MSMg01no365_a21.b1)MSMg01-365A21.TJ (MSMg01no365_a21.g1)
ACCAG473103AG473104
length811747
length of high quality
(start - end)		298 (61 - 358)508 (66 - 573)
definitionCHROMAT_FILE: MSMg01no365_a21.b1 PHD_FILE: MSMg01no365_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:27 2005CHROMAT_FILE: MSMg01no365_a21.g1 PHD_FILE: MSMg01no365_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,910,936 - 41,911,233)(41,698,636 - 41,699,143)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTG
TTGTTGTACCTCAGAGTGTGGGTGGGCATCCTGGGCACTTGATGTTTGTG
CCAGATGTAAGGCACAGGTGGAGAACATCTGGGGAAGGCAGAGTGAAGGG
CTGTGCGGCAGCTCACCTGGATAGGAGGAGAGCAGGCTGGGCGGAGCGTC
CCCAAGGTGACCCCCAGGAGAGAGTGGTGGAGAGAGTGGAGGATCCCGCA
GGTCTTTGCCACTTAAACTTTGGGGTACAATAGTTGAGGGTGATTAACTC
CTACAACCATCACATCCTCTCATAAAGTAGTTCCTTTTGGTTGGTTGATT
TGGGTTTTGCTGGTGGTGTTTGCGCTTGACATCGCTACCCTCCACGTACT
CTCCTTCCCCCCTTTCCCCTTTTGCCTACTTTTCCCTCGCCTCTTTCTCT
TTCCCTCCTCCCCTGTCCCTCCTTTTCTCTTCCCCCTTTGCTCTTCTCTA
TTCCTTCTCCGTCCTATTCTCCCTTTTTTTCCTTTTCTTTCCCTTTCTTC
TTCCCGCCCTTCCCTTTTCCTTCTTTCCTATTCCCCCCTCCCCCCCCCCC
TTTTTTCCCTTCCCTTTTTCCCCTTTTCTCTCGCCCTTTTCCGTCTTTCC
TTATTTCCCCCTTTCCCCTCTCCCCTTTTTGTTTTTTTATCTCTCTGTTA
TCCTTCTCTTTTCCGCCCCCCTTTTCTTACTTCCCCTTTTTTCTCTTTCT
TTCCCCCTATTTCTTCCCGTTCTCATCACCTCCCCGCTATATCCCTCCCT
TTTTTTCCCCG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTAGAAACTGAAGCATGTCTACAAACACACAGTGTG
GCCCAGTCTTGGGGAACAACTTCAAATTTTAAAAAGGACTTTCATCTAGG
TTCACTGCTTGCTAAATATAAAAATAATGATTCAACAGGAAAATTGGGTA
AGTCAGGCAAGAAATACTGCCTGTTTTTGAAGATTCTGCTGTCTCCGTGG
TTATAGCTGTTAACCACAGCTTTCAGCTTTGGACCCAACAGCTTGATACA
TTGTTAGCATTGGCTGGTGTTTTTAGCATGCAAACGTAAACCCCTTAGCA
ACAATGTTGTCTAGGGAATTGGAAGGCTTAGATTCTTCTGAGTTCTAGAT
ACATTGCAGGTGACCACTAATTGTCTCCTTACTGGTGAGGAGCTAGTTTG
AAGATAACATCTTTTACACGGTGCTAGATTGATATCATTTATCATCATTT
TTTATTTTTGTTGAGACAAGGTCTTACTGTAGCTCAGAATGGNCTGCAAT
TCATAACCCTGTCTCTGTTTCCAAATGTTCAGATTATAGATGTGTACTCA
TAGAGCCCGACATAAACTTTTGTGTGAAATGAAAAAAAAAAACTATGAAG
AATATAACAGAACCTGTCCTACCCTGACTAATTTGTGTCAAAGGCAATAA
AGAGCCACCCTTTTATTTTTTTATTTTTTATACAACACATCACCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_a21.b1 MSMg01no365_a21.b1 CHROMAT_FILE:
MSMg01no365_a21.b1 PHD_FILE: MSMg01no365_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:27 2005
         (298 letters)



>mm_chr10_41910736_41911433
          Length = 698

 Score =  522 bits (270), Expect = e-153
 Identities = 291/298 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagtgtgggtgggcatcctgggcacttgatgtttgtgccagatgtaaggcacaggtg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcagagtgtgggtaggcatcctgggcacttgatgtttgtgccagatgtaaggcacaggtg 439

                                                                       
Query: 61  gagaacatctggggaaggcagagtgaagggctgtgcggcagctcacctggataggaggag 120
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 438 gagaacatctggggaaggcagagtgaagggctgtgcggtggctcacctggataggaggag 379

                                                                       
Query: 121 agcaggctgggcggagcgtccccaaggtgacccccaggagagagtggtggagagagtgga 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agtaggctgggcggagcgtccccaaggtgacccccaggagagagtggtggagagagtgga 319

                                                                       
Query: 181 ggatcccgcaggtctttgccacttaaactttggggtacaatagttgagggtgattaactc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggatcccgcaggtctttgccaattaaactttggggtacaatagttgagggtgattaactc 259

                                                                     
Query: 241 ctacaaccatcacatcctctcataaagtagttccttttggttggttgatttgggtttt 298
           ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 258 ctacaaccaccacatcctctcagaaagtagttccttttggttggttgatttgggtttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no365_a21.g1 MSMg01no365_a21.g1 CHROMAT_FILE:
MSMg01no365_a21.g1 PHD_FILE: MSMg01no365_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:27 2005
         (508 letters)



>mm_chr10_41698436_41699343
          Length = 908

 Score =  953 bits (493), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaactgaagcatgtctacaaacacacagtgtggcccagtcttggggaacaacttcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaactgaagcatgtctacaaacacacagtgtggcccagtcttggggaacaacttcaa 260

                                                                       
Query: 61  attttaaaaaggactttcatctaggttcactgcttgctaaatataaaaataatgattcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttaaaaaggactttcatctaggttcactgcttgctaaatataaaaataatgattcaa 320

                                                                       
Query: 121 caggaaaattgggtaagtcaggcaagaaatactgcctgtttttgaagattctgctgtctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaaaattgggtaagtcaggcaagaaatactgcctgtttttgaagattctgctgtctc 380

                                                                       
Query: 181 cgtggttatagctgttaaccacagctttcagctttggacccaacagcttgatacattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtggttatagctgttaaccacagctttcagctttggacccaacagcttgatacattgtt 440

                                                                       
Query: 241 agcattggctggtgtttttagcatgcaaacgtaaaccccttagcaacaatgttgtctagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcattggctggtgtttttagcatgcaaacgtaaaccccttagcaacaatgttgtctagg 500

                                                                       
Query: 301 gaattggaaggcttagattcttctgagttctagatacattgcaggtgaccactaattgtc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 gaattggaaggcttagattctcctgagttctagatacattgcaggtgaccactaactgtc 560

                                                                       
Query: 361 tccttactggtgaggagctagtttgaagataacatcttttacacggtgctagattgatat 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccttactggtgaggggctagtttgaagataacatcttttacacggtgctagattgatat 620

                                                                       
Query: 421 catttatcatcattttttatttttgttgagacaaggtcttactgtagctcagaatggnct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 catttatcatcattttttatttttgttgagacaaggtcttactgtagctcagaatggcct 680

                                       
Query: 481 gcaattcataaccctgtctctgtttcca 508
           ||||||||||||||||||||||||||||
Sbjct: 681 gcaattcataaccctgtctctgtttcca 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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