Query= MSMg01no365_j04.b1 MSMg01no365_j04.b1 CHROMAT_FILE:
MSMg01no365_j04.b1 PHD_FILE: MSMg01no365_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:06 2005
(455 letters)
>mm_chr10_104766649_104767502
Length = 854
Score = 797 bits (412), Expect = 0.0
Identities = 441/454 (97%), Gaps = 8/454 (1%)
Strand = Plus / Minus
Query: 4 ggaattcttttattc-ccattttataatttatttgtggacgggggattcccttggcacag 62
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 ggaattcttttaaacagcattttataatttatttgtggacgggggattcccttggcacag 758
Query: 63 cacatctgtagaggtctgacgaaaacatgagggagtcactgatctccttcaaccatgtga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 cacatctgtagaggtctgacgaaaacatgagggagtcactgatctccttcaaccatgtga 698
Query: 123 gtcccaggaatcaaatcaagtccataaacttgcactaagtgccttctccaaggtacctct 182
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 697 gtcccaggaatcaaatcaagtccataaacttgcactaagtgccttctccgaggtacctct 638
Query: 183 ctctaccaagacctagaatttttatttgttttagtttacaattgtt---ataattttgat 239
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 637 ctctaccaagacctagaatt----tttgttttagtttacaattgttatcataattttgat 582
Query: 240 ggagtttccttaatcaagtttctagaatgctattatggctttaaacaatgatggcctaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ggagtttccttaatcaagtttctagaatgctattatggctttaaacaatgatggcctaaa 522
Query: 300 aactttaaagtgcattttataacagaaaaatagggagcactctgtatttttcaatattcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aactttaaagtgcattttataacagaaaaatagggagcactctgtatttttcaatattcc 462
Query: 360 ttctatatattcagacaaccattacatgaaattattcagacaatatgacacaaccgtact 419
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 461 ttctatatattcagacaaccattacatgaaattattcagacaatatgtcacaaccgtact 402
Query: 420 gaactgttcaactttttatgcagagtattacgta 453
||||||||||||||||||||||||||||||||||
Sbjct: 401 gaactgttcaactttttatgcagagtattacgta 368
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space: 375580
Effective search space used: 375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_j04.g1 MSMg01no365_j04.g1 CHROMAT_FILE:
MSMg01no365_j04.g1 PHD_FILE: MSMg01no365_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:07 2005
(486 letters)
>mm_chr10_104582123_104583007
Length = 885
Score = 901 bits (466), Expect = 0.0
Identities = 481/486 (98%), Gaps = 1/486 (0%)
Strand = Plus / Plus
Query: 1 catcaaagttagaaccctcaaccacactttcgtttgctgttagatgaataatttctggta 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcaaacttagaaccctcaaccacactttcgtttgctgttagatgaataatttctggta 260
Query: 61 gtgttagagactatttagcaacatcttatttggacaatttaacaatggcttatttgtgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgttagagactatttagcaacatcttatttggacaatttaacaatggcttatttgtgat 320
Query: 121 ttatctcttgaaaaggcagattagtacattcctataaaagctcactctaacccaatagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatctcttgaaaaggcagattagtacattcctataaaagctcactctaacccaatagtc 380
Query: 181 aaagagattattggaataaaatataaactggaagttgaaatttaacccagttttttgtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagagattattggaataaaatataaactggaagttgaaatttaacccagttttttgtgg 440
Query: 241 acataaggcagcttaataaataatattattaggaaatcatgattaggtataaacagatga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acataaggcagcttaataaataatattattaggaaatcatgattaggtataaacagatga 500
Query: 301 gtgctgtcagttaactcacaatgaggtttttttttgaaacatacatttgtcaatatctgc 360
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 501 gtgctgtcagttaactcacaatgagtttttttttt-aaacatacatttgtcaatatctgc 559
Query: 361 agtgtaaacacatgcacaatagccggtctcaattagcaagtgtggctgaacagactaggc 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agtgtaaacacatgcacaatggccggtctcaattagcaagtgtggctgaacagactaggc 619
Query: 421 tctagtacactgagaatgaagtatgaatggctaaacctgtgaaatacgtgttctagttca 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tctagtacactgagaatgaagcatgaatggctaaacctgtgaaatacgtgttctagttca 679
Query: 481 ccttcc 486
||||||
Sbjct: 680 ccttcc 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 885
Length adjustment: 10
Effective length of query: 476
Effective length of database: 875
Effective search space: 416500
Effective search space used: 416500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
