BAC Information

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BAC

Clone NameMSMg01-366A14
Chromosome10 (Build37)
Map Location 129,715,851 - 129,716,184
singlet/doubletsinglet
Overlap geneNeurod4
Upstream geneOlfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820, Olfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405, Olfr825, Olfr826, Olfr827
Downstream gene5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366A14.T7 (MSMg01no366_a14.b1)MSMg01-366A14.TJ (MSMg01no366_a14.g1)
ACCAG473849AG473850
length801763
length of high quality
(start - end)		103 (82 - 184)335 (85 - 419)
definitionCHROMAT_FILE: MSMg01no366_a14.b1 PHD_FILE: MSMg01no366_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:44 2005CHROMAT_FILE: MSMg01no366_a14.g1 PHD_FILE: MSMg01no366_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTACCCCCAAATCTGCGGCCGCTATACGACTCCCATAGTCCGAGGATC
CGCGGAATTCTTTGTTTAGCCCTGTACCCCCTTTTTAATGGGGTTATTTG
TTTTTCTGCAGTCCATATTCTTGAGTTTATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATGCACACACACGCACGCGC
GCGCGCGCCCGCGCCCCAGCCCCCCCCCCCCCCCCCCCGACCGAGGCGCA
CCCCCCCCCGCGCGCCCGCGCGCCCCCGCGCGCCCGGCCCGCGCGCGCGC
GCGCGCGCGCGCGCGCCCCCCCCCCCCCCCCCCACCCCCCCTCTCTCCCC
CCCTCCCCCTCTCCCTCCCCCCCCCACTGCCGGTCCGGGCCCCCCCCTGC
CCATGTTTCCCCTCCTCCCCCCCCCCCCCCGCCCTTCCCTTTCCCCCCCC
GCTGCCGGCCCCCCTCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCC
CCACCGGCCCCCCCCCCCCCCCCCCCTCGCCCCCCCCCCCCCCCCGGGCC
CCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCGCCCCCCCCCCCC
CCCCCTCCCCCCCCCCTGCCCCCCTTCTCCCCCCGCCCCCCTCCCCCCCC
CGCCCCCCCCCCTGGCCCCCCCCCCGGCCCCCTCCCCCTGTCCCCCCCCC
CCCCCCCCCGTGCCCCCCCCCCCCCTCCTCCCCCCCCCCCCCTCCTCCTT
CCCCCCCCTTCCCCTCCCCCCCCCCCCCCCCCACGCCCCCCCTCCCCCCC
C

NCTTCTTTTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTATACCTTTACC
TTCATTCATTCTGGAAAAGTTTCAGTTGGAAAGTGAGTGAAAAGTATTTA
CACATGTATTTGTGGTAGACTGTCCAGTGTTTTTCCCCTCATAAGCTGAT
GTTACTTGATTACCTCTTGCTGCTATGGCTCTAAACACAACAGAAAGAGG
TTATACAGGCTAATGTTTAGAGAAGTTAAGAAACACATAAATGAAATATT
TTGCTCAGAACGTACAACAAAAACAAAAACAAACACAAAAACAAAAAAAG
AAACATAAACCAAGGAGTTCACATGTGGCATTGTATGGGAACAGTGAGTA
GAATAGTAACTCTTTCATAGCCAAGCTTTTACATCTACAGCTACAATTTT
CTATTGATTAGTAACTATCTGCATGCCCCACACTTATTCCCAAAAGGAAA
AAAAAAAATAAAAAAGGTAAAAATAAAAATTTTTTTNTTTTTTTTNNNTT
TTTTTTTTTTTTTTNTTTTTTTATATTTTATTTTTTTTTATTTTTATTAT
ATTTATNTTTTCATTATTTATTTTTTTTTTTTAAATAATTTTAAATTTTT
TTTATAATTTTTTATATTTTTAAATATAATATATTTTTTTATTATGTAAT
TATTTATTTTCTTTTTTTTTTTCATCTTACTTATGTTTATTTCCCTTTTT
TTCTTCCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_a14.g1 MSMg01no366_a14.g1 CHROMAT_FILE:
MSMg01no366_a14.g1 PHD_FILE: MSMg01no366_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:44 2005
         (335 letters)



>mm_chr10_129715651_129716384
          Length = 734

 Score =  619 bits (320), Expect = 0.0
 Identities = 332/336 (98%), Gaps = 3/336 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctatacctttaccttcattcattctggaaaagtttcagttggaaagtgagtgaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctatacctttaccttcattcattctggaaaagtttcagttggaaagtgagtgaaaag 260

                                                                       
Query: 61  tatttacacatgtatttgtggtagactgtccagtgtttttcccctcataagctgatgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttacacatgtatttgtggtagactgtccagtgtttttcccctcataagctgatgtta 320

                                                                       
Query: 121 cttgattacctcttgctgctatggctctaaacacaacagaaaga-ggttatacaggctaa 179
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 321 cttgattacctcttgctgctatggctctaaacacaacagaaa-acggttatacaggctaa 379

                                                                       
Query: 180 tgtttagagaagttaagaaacacataaatgaaatattttgctcagaacgtacaacaaaaa 239
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 380 tgtttagagaagttaagaaacacataaatgaaatattt-gctcagaacctacaacaaaaa 438

                                                                       
Query: 240 caaaaacaaacacaaaaacaaaaaaagaaacataaaccaaggagttcacatgtggcattg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 caaaaacaaacacaaaaacaaaaaaagaaacataaaccaaggagttcacatgtggcattg 498

                                               
Query: 300 tatgggaacagtgagtagaatagtaactctttcata 335
           ||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatgggaacagtgagtagaatagtaactctttcata 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 734
Length adjustment: 9
Effective length of query: 326
Effective length of database: 725
Effective search space:   236350
Effective search space used:   236350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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