BAC Information

Click to search

BAC

Clone NameMSMg01-366C16
Chromosome10 (Build37)
Map Location 109,344,723 - 109,344,894
singlet/doubletsinglet
Overlap geneNav3
Upstream geneSyt1
Downstream geneLOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366C16.T7 (MSMg01no366_c16.b1)MSMg01-366C16.TJ (MSMg01no366_c16.g1)
ACCAG473945AG473946
length778790
length of high quality
(start - end)
475 (53 - 527)168 (83 - 250)
definitionCHROMAT_FILE: MSMg01no366_c16.b1 PHD_FILE: MSMg01no366_c16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:55 2005CHROMAT_FILE: MSMg01no366_c16.g1 PHD_FILE: MSMg01no366_c16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTACAGCTGATAAACAACTTTAGCAAAGTGGCTGAATA
CAAAATTACTTCAAAGAAAAGAGTAGCCTTTCTTTATACAAATGATAAAT
GGAATCAGAAAGAAATTCAGGAAACAACACACTTCATAATAGCCACAAAT
AATATAAACCTTGGTGTAACTCTAACCAGGCAAGTGAAAGACCTATATGA
CAAGAACTTCAAGTCCCTGAAGAAAGAAATTGAAGAAGATATCAAAAGAT
GACAAAATCTCCCACGCTCCCATGGATAGGTAGAAACATAAGAGAACATA
AGAAAAATGGCCAGCTTACCAAAAGCAATCTACAGGTTCAATGCAATCCC
CATCAAAATTCTAACACACAGTTTTACAGACCTTGTAAGAGAAATTCTCA
ACTTCATATGGAAAACAAAAACCCCAGGATAGCCAAAACAGTCCTGAAAA
ATAAAAGAAGTTTTGGATGAATCTCCATCCCTGATTTATACTACAGAGNC
ATAGTGATTAAGAACTGTGTGTACACAGACAGACAGGATGATCATTGGAA
TCGAATCCNAGACCCAGGAATAACCCCCACACCTATGATAACTCAACTCT
GACTCTGTTGACTGCCGTTGGAACCCCTTCCTCTACCGGGTTACTAATTT
GGCCTCCTGGAGAAAAGAGGGGTTAAGCCAACGGTGACGGATGGAGGCCC
CAGGGGGGGGGGACCCCAGAAAAATTCC
NNNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACTTCCAAAGCCAATA
TTCTTCAAGTATTTTGATTAACAAATGTTATATAAATCTCTATGAATTAT
ACTTTAGAAAATAAAGAAGATATAATAAGACTAAATTTATTCCAAACCAA
AAAGAGTATATGTGTGTGTATATATGTGTGTGTGTATATATATATGTGTG
NGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_c16.g1 MSMg01no366_c16.g1 CHROMAT_FILE:
MSMg01no366_c16.g1 PHD_FILE: MSMg01no366_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:56 2005
         (168 letters)



>mm_chr10_109344523_109345090
          Length = 568

 Score =  313 bits (162), Expect = 3e-90
 Identities = 168/172 (97%), Gaps = 4/172 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacttccaaagccaatattcttcaagtattttgattaacaaatgttatataaatctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctacttccaaagccaatattcttcaagtattttgattaacaaatgttatataaatctcta 260

                                                                       
Query: 61  tgaattatactttagaaaataaagaagatataataagactaaatttattccaaaccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaattatactttagaaaataaagaagatataataagactaaatttattccaaaccaaaa 320

                                                               
Query: 121 agagtatatgtgtgtgtatatatgtgtgtgtgt----atatatatatgtgtg 168
           |||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 321 agagtatatgtgtgtgtatatatgtgtgtgtgtgtatatatatatatgtgtg 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)