BAC Information

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BAC

Clone NameMSMg01-366G12
Chromosome10 (Build37)
Map Location 22,697,892 - 22,698,311
singlet/doubletsinglet
Overlap genenone
Upstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366G12.T7 (MSMg01no366_g12.b1)MSMg01-366G12.TJ (MSMg01no366_g12.g1)
ACCAG474126AG474127
length804778
length of high quality
(start - end)
452 (75 - 526)420 (76 - 495)
definitionCHROMAT_FILE: MSMg01no366_g12.b1 PHD_FILE: MSMg01no366_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:15 2005CHROMAT_FILE: MSMg01no366_g12.g1 PHD_FILE: MSMg01no366_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAATGCGC
GGAATTCAATGAATTTGCCGGAACAGGCTAGTGAGATGGCTCAGCAGGTA
AGAACACTTACTGCTCTTCTGAAGGTCCTGAGTTCAAATTCCAGCAACCA
CATGGTGGCTCACAACCACCTGTAATGAGATCTGATGCCCTCTTCTAGTG
CGTCTGAAGACAGCTACAGTGTACTTAGTTATAATAATAAGTAAATCTTT
AGGCCAAAGTGAACAGGGACTGAGAGAGTGGGGCTTACCAGAGTGAGCAG
AGGTCCTAAATTCAATTCCCTATATCTATATGAAGGCTCACAACTATTTG
TACAGCTACAGTGTGTACTCATATACATAAACAAACAAACAAACAAACAA
ATGGACGTTGACACAAAAATACCCAATAAAATTCTAGCAAACTGAATCTA
AGAACACATAAAAAAAAATCACTCATCACGATCAAGTAGGCTTCATCCCA
GGTTGCAGGGATGTTTCAATATATGAAGAAAATCCATCAATGTATTCTAC
CATATAAACCAACTAAAGGAAAAAACCCCCACGATCATCTCATTTAGATG
TTGGAAAATCCCCTTATCAAATCCCGTATCCCTTCCTGTTTAACGTTCTT
ATAAAGATCCGAAATTCTTCAAATCAATTGGGTGAGAAACTTAATAAAAC
CCCCTAAAATTAAGGGCATTAAAAAAGTTGGCCACTTTCCTTTTTTTAAT
AAATTTTTTGAGAACCCTTCCCTCACAAATATTCAACCCTTGTGAGATTC
TGTN
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGGCTTAGCAGCATAAAAATCTG
AGTAGTTCATTTGCTAGACACAATCCAAAGTACTCCAACAAAATCATCTT
TTCCATGAACCTTTAATCTCCAACTCCATGGAGATTTATCCATTTGTGTT
CTGTGGAGCTGAGGGACCCTATAACAGGAAAAGCAAAGGTGCATGGGTTT
TGTGTACATTTGTGCCCTGTTCTGAACGTTAACTATTGACCAACAGAACC
TCAAAGAGAAGCTCATTTGTATTCATTGTGAGTTTGGAAACATCTTTAAA
GAAGCTGCAGGGCTTAATGACTTTAGAACACCATTGAGGACTTACCCTTT
TGTAGTTTTCTACAAAATGAATGCTAGTATTGTTACTCTTTGAGCCTAGA
ACAAATAATCATAATATTTCTAAGTTTGACTATATTTGTTAGTGTACTAT
TGCTGTATAAACAAACAAAAAAAACACATGTTGACCAAGAAAACTTATCT
AAGGAAAGTGTGGTAGTTTGAAAAATGATGGGCCATGGAATGGTCTTATT
TGAAGCGGTTGCCTCTCTGTACCAATTTGTTCTTTTTGTTTTGGCCCAAT
TACACATCTCTTTTTTTTTTTTTAACATACCCCCCAAAACCCCTCGTAAT
TAATAATACAATTCAATTCCTCCCTTATCTTATTTCCTTGTTATTATCTT
TTTTCCCCCCTTTCTTTAACCATCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_g12.g1 MSMg01no366_g12.g1 CHROMAT_FILE:
MSMg01no366_g12.g1 PHD_FILE: MSMg01no366_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:15 2005
         (420 letters)



>mm_chr10_22697692_22698511
          Length = 820

 Score =  774 bits (400), Expect = 0.0
 Identities = 415/420 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggcttagcagcataaaaatctgagtagttcatttgctagacacaatccaaagtactc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 tttggcttagcagcataaaaatctgagtagttcatttgctagacgcaatccaaagtactc 561

                                                                       
Query: 61  caacaaaatcatcttttccatgaacctttaatctccaactccatggagatttatccattt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 560 caacaaaatcatcttttccatgaacctttaatctccaactccatggagatgtatccattt 501

                                                                       
Query: 121 gtgttctgtggagctgagggaccctataacaggaaaagcaaaggtgcatgggttttgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgttctgtggagctgagggaccctataacaggaaaagcaaaggtgcatgggttttgtgt 441

                                                                       
Query: 181 acatttgtgccctgttctgaacgttaactattgaccaacagaacctcaaagagaagctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 acatttgtgccctgttctgaacgttaactattgaccaacagaacctcaaagagaagctca 381

                                                                       
Query: 241 tttgtattcattgtgagtttggaaacatctttaaagaagctgcagggcttaatgacttta 300
           |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 380 tttgcatccattgtgagtttggaaacatcttgaaagaagctgcagggcttaatgacttta 321

                                                                       
Query: 301 gaacaccattgaggacttacccttttgtagttttctacaaaatgaatgctagtattgtta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaacaccattgaggacttacccttttgtagttttctacaaaatgaatgctagtattgtta 261

                                                                       
Query: 361 ctctttgagcctagaacaaataatcataatatttctaagtttgactatatttgttagtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctctttgagcctagaacaaataatcataatatttctaagtttgactatatttgttagtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)