BAC Information

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BAC

Clone NameMSMg01-366K18
Chromosome10 (Build37)
Map Location 109,339,354 - 109,339,817
singlet/doubletsinglet
Overlap geneNav3
Upstream geneSyt1
Downstream geneLOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366K18.T7 (MSMg01no366_k18.b1)MSMg01-366K18.TJ (MSMg01no366_k18.g1)
ACCAG474330AG474331
length1,186760
length of high quality
(start - end)		---464 (80 - 543)
definitionCHROMAT_FILE: MSMg01no366_k18.b1 PHD_FILE: MSMg01no366_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:35 2005CHROMAT_FILE: MSMg01no366_k18.g1 PHD_FILE: MSMg01no366_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAAAAAATTCCAAAAATTTTTGCGGCCGGCTAATACNGAACTCNCT
AATATTTTCTAGAGAGATCCGCGGGAAATNNTCTAGACNTTCTTCGATTN
TNNCAGGTGGGTAGTGGGTGGATCNNNTTAAAATATGGAATCANNTCGAC
TGGGGGTGATNNGAAGATNNTTTANNNAGAAAAGCACANTTAAATTTGTT
NNNCAGGTGGCTAAAGAATGTTTGGGCCTNCANAAGCATTCTATGAGATA
NTGAGCCTAAAGGTAGAAAGGTGTCGCTGTGNNCTCAAAACTAGGTTCTT
GTGATTAAAANNNNNNNNNNNNNAACTACCCAAGTATAGTATGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAACGTACTCGATTATAGAANNNNNNNCT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTGNNNNNNNNNNNNNNNTNNTNNNNNNNNNNNNNNTTNNNCCCCCCN
NNNNNNNNNAATGATTTGCTGAAATATAATCATATTAAATTTTNATCAAC
TACCCGCCCCCCCTGCGCGGGAGAGAAACGCCCGGGNNAAAAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNGNNGCTTTTNNNNNNNNNNNNNNNNNNNN
NNNNNANNNANNAAAANANNNANNNNAAANNNNNANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAANNNNNNNNNNNNNANNNNNNNANAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNANNAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCANNNNNNNNNNNANNNNNNNNNNANNCCCCCCCCCCCCNNN
NNNCNNNNNNNNNCCCNNNNNNNNNCNCNCCCCCCCCCCAACNCCCCCCC
CNTTTTCCNNCCCTCNNCCCCCTTTCCNTTTCCCCTCTCCCCCCCCNCTT
CCTTCCTCTTTCTCCCCCCTNTTTTCCCCTTTTCCCCTTCATCACACCAT
CATTATTATAAATACGGATAATATAAAGAATTGAAG

NNNNNCCGATGATATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAGCAGTCTTTCTTGGA
GACTTTTATCCTCACTACAGGAAGTCCATCTTAGGTTCATCCCAGAAAAT
TAAGTTGTGGCTTTGTGACTAGCTGTTTTGTTTTTGTTTGTTTGTTTGTT
CTCTCAGCTGTTCATCACTCTATGATTTTATTTATAGATGTTAACCTTTG
CTAGATGGGAAAGGGCAGATGCTGCTGAGGTAAAGGGCCTCCAGACTCAC
TGAGGAGTTTCTGAAAGACACTATGACTCTTATCTCAGTGTCATATATTG
TTCAGCATATAGACTACAGCAAGCAAGCCTTCGGAGCTGTTTCCAACAGG
GGCACAATCTCATATGCGTACACTGACCTTCCTGAAGAGCACCCAAAACG
CTATGCTTATATTTGAAAAATGCACAAGGTAAGTGCTATTCCAAAAATAG
TTGCCCCAGCAAACTCTATTGCTTTAAACTTGAAATTAAGTTTACTGAGA
GAAAGCCCAGTGTACAGAATTACATACTATAGGAACCGCAAAACAAACGG
GAAATGAAAGAAAAATTAGGTCTGAGGTCACAAAAAACCCCTACAGGCCC
GGAACGCGGAATTCAGGAATTCTCCAAAACTGGAGTTGTTGCCCGGACTA
TGGAAACAACAAAATCTTGGTAGACAATGATTTTTTTTCTCAACATGTCT
CCGACACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_k18.g1 MSMg01no366_k18.g1 CHROMAT_FILE:
MSMg01no366_k18.g1 PHD_FILE: MSMg01no366_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:35 2005
         (464 letters)



>mm_chr10_109339154_109340017
          Length = 864

 Score =  851 bits (440), Expect = 0.0
 Identities = 458/464 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaagcagtctttcttggagacttttatcctcactacaggaagtccatcttaggttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgaagcagtctttcttggagacttttatcctcactacaggaagtccatcttaggttca 260

                                                                       
Query: 61  tcccagaaaattaagttgtggctttgtgactagctgttttgtttttgtttgtttgtttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcccagaaaattaagttgtggctttgtgactagctgttttgtttttgtttgtttgtttgt 320

                                                                       
Query: 121 tctctcagctgttcatcactctatgattttatttatagatgttaacctttgctagatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctctcagctgttcatcactctatgattttatttatagatgttaacctttgctagatggg 380

                                                                       
Query: 181 aaagggcagatgctgctgaggtaaagggcctccagactcactgaggagtttctgaaagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagggcagatgctgctgaggtaaagggcctccagactcactgaggagtttctgaaagac 440

                                                                       
Query: 241 actatgactcttatctcagtgtcatatattgttcagcatatagactacagcaagcaagcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actatgactcttatctcagtgtcatatattgttcagcatatagactacagcaagcaagcc 500

                                                                       
Query: 301 ttcggagctgtttccaacaggggcacaatctcatatgcgtacactgaccttcctgaagag 360
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| 
Sbjct: 501 ttcggagctgtttccaacagaggcacaatctcatatgcgtacactgaccgtcctgaagaa 560

                                                                       
Query: 361 cacccaaaacgctatgcttatatttgaaaaatgcacaaggtaagtgctattccaaaaata 420
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacccaaaacactatgcttatatttgaaaaatgcacaaggtaagtgctattccaaaaata 620

                                                       
Query: 421 gttgccccagcaaactctattgctttaaacttgaaattaagttt 464
           ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 621 gttgccccagcaaactctattgcttaaaacttgcaattaagttt 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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