BAC Information

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BAC

Clone NameMSMg01-367F07
Chromosome10 (Build37)
Map Location 95,662,465 - 95,662,926
singlet/doubletsinglet
Overlap genenone
Upstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491
Downstream geneLOC667380, Btg1, LOC628256, 4930556N09Rik, EG667407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367F07.T7 (MSMg01no367_f07.b1)MSMg01-367F07.TJ (MSMg01no367_f07.g1)
ACCAG474829AG474830
length784779
length of high quality
(start - end)		467 (51 - 517)391 (56 - 446)
definitionCHROMAT_FILE: MSMg01no367_f07.b1 PHD_FILE: MSMg01no367_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:27 2005CHROMAT_FILE: MSMg01no367_f07.g1 PHD_FILE: MSMg01no367_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATCCCCATAACAATCTGGACAAGGACTATCTCCAGAGAAA
AAGACACTCCAACAGTTTCTGGGGGTGTTTCCCATGTTGTATTCTTTGCC
CTGAGTGGTAATGGCATTGAGTGGTAACACATTTGTTTGGTACCTGTACG
TGCATTATGTCACCATATGTTCTGCCATCCATTCCAGTGGTTTTGGTGAG
AGAGGTGGTCTTCCATACACTGCATTAGTTCTGGGTCAGAGAGGCGGGCT
GCTTGACATTACAGTGGTCCTGGCAAGAGAGGAGTTTTTGTATATTAGTT
TTCTACAAGACCCAAAGGGACCAGTTCTTGAGAAGGTGCCTTGAAAGAGT
TGAGGTCATCTTCTCCCTAAGCTCTAGGTCCCCGGATGCTATGTTCCCTC
TAATCAGTCCATATATGAGGCCAGTATGCAAGAGAGGAGAGTTGGCTATA
CTTTGGAGGGAGAAGAATCAAGTATCCATGTGAGGTCTCACAGAGGCGTT
GGGTCTGGTTGTTGTCCCCTCCTTTCCCTTTTTCTTTCTCCTCCTTCCCT
CTTTTCTTCCCATCTTCTTTTCCCTTCTTCCCCCCCTTTTTTTCTTTCTT
TCCCCCCTTTTTTCCTTTTTCCTTTTCCCCCCTCCTTTTTTTTCCCCCCT
TTTTTCTCCTTTCCTCCCTATTTTCTCTTTTTCCCCCTTCTCATTTTTTC
TTTTTTTTCTTTACCCCCTTTTATTTTCCCCCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTGATCTTTCTAATAATTTTAATATGAAGGGCTGTTGTATTTTGT
CAAAGGCTTTTTCAGCATCTAATGAGATAATCATGTGGGATTTTTTTCTT
TGAATTTGTTTATTTAGTGGATTACATTGATGGATTTTTCACATGTTGAA
CCATCCCTGCATCCCTAGGATGAAGCCTACCTGATCATGGTGTATGATGG
TTTTGATGTGTTCTTGGACTTGGTTTTCAAAATCTTTATTTAATATTTTT
GCATCAATATTCATAAGGAAAATTGGTTTGAAGTTCTCTTACTATTCTCA
ACAGTAAATGAACTTGTGGGAGAATCTCACCAACCTCAAGCTGTACTACA
GAGCAATAGTGATATAAAGTGCATGGCATTGGTACAGAGACAGGCAGGTA
GATCAGTAGAATAGAATTGAAGACCCAGAAATAAACTCTCACACCTTAAA
CACATCCGTACAGGGGAAAAATTTCCTGAACAGAAACTCCGGGGACCCTT
GCTCTAAGATCACTTGTTGGAAAATGAGATTTCCTGAAATTGCCAACGCT
TCTGTAAAGGCAAAAAAACCTTGTCCATAAAAATATGGGTGACCCACCAT
ATTGGGAATAAATTTTTTTTCCCCCCTCCCCTCCCCCCAAAGTGGGGGCG
CTTCTGGCTTATTCCTATTGACTTTTTGTAGGTATATGTTCCCAGATCTT
CAATATCCCCCTTCAATAGTGGGGTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_f07.b1 MSMg01no367_f07.b1 CHROMAT_FILE:
MSMg01no367_f07.b1 PHD_FILE: MSMg01no367_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:27 2005
         (467 letters)



>mm_chr10_95662261_95663126
          Length = 866

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%), Gaps = 1/463 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatccccataacaatctggacaaggactatctccagagaaaaagacactccaaca 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaattcatcccca-aacaatctggacaaggactatctccagagaaaaagacactccaaca 608

                                                                       
Query: 65  gtttctgggggtgtttcccatgttgtattctttgccctgagtggtaatggcattgagtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtttctgggggtgtttcccatgttgtattctttgccctgagtggtaatggcattgagtgg 548

                                                                       
Query: 125 taacacatttgtttggtacctgtacgtgcattatgtcaccatatgttctgccatccattc 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 547 taacacatttgtttggtacctgtacgtgcattatgccaccatatgttctgccatccattc 488

                                                                       
Query: 185 cagtggttttggtgagagaggtggtcttccatacactgcattagttctgggtcagagagg 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tagtggttttggtgagagaggtggtcttccatacactgcattagttctgggtcagagagg 428

                                                                       
Query: 245 cgggctgcttgacattacagtggtcctggcaagagaggagtttttgtatattagttttct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cgggctgcttgacattacagtggtcctggcaagagaggagtttttgtatattagttttct 368

                                                                       
Query: 305 acaagacccaaagggaccagttcttgagaaggtgccttgaaagagttgaggtcatcttct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acaagacccaaagggaccagttcttgagaaggtgccttgaaagagttgaggtcatcttct 308

                                                                       
Query: 365 ccctaagctctaggtccccggatgctatgttccctctaatcagtccatatatgaggccag 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccctaagctctaggtctccggatgctatgttccctctaatcagtccatatatgaggccag 248

                                                      
Query: 425 tatgcaagagaggagagttggctatactttggagggagaagaa 467
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tatgcaagagaggagagttggctatactttggagggagaagaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 866
Length adjustment: 10
Effective length of query: 457
Effective length of database: 856
Effective search space:   391192
Effective search space used:   391192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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